View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1046_low_13 (Length: 434)
Name: NF1046_low_13
Description: NF1046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1046_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 30 - 428
Target Start/End: Complemental strand, 39559352 - 39558954
Alignment:
| Q |
30 |
gctcacgttataaagccaatcaaactcgatggaacctttggaaatgttagctctgaccagattggataggtttagaacctctctacctgtacgaatcacc |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| |
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| T |
39559352 |
gctcacgttataaagccaatcaaactcgatggaacctttggaaatgttagctctgaccaaattggataggtttagaacctctctagctgtacgaataacc |
39559253 |
T |
|
| Q |
130 |
ttacaaagtgccgtaaggattacatcctttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559252 |
ttacaaagtgccgtaaggattacatcctttgcttccaactcctctagaatgggacaaacagatagaagtttcaagatatagtcagaatatgtgtaactga |
39559153 |
T |
|
| Q |
230 |
cagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgtt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559152 |
cagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcattcaatgttaccctcttcaatttgaggacggtcaaggttttgtt |
39559053 |
T |
|
| Q |
330 |
agttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcctcgtgtcgtaatgattaaatcctttgcttc |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39559052 |
agttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcctcgtgttgtaatgattaaatcctttgcttc |
39558954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 32 - 358
Target Start/End: Complemental strand, 50814959 - 50814636
Alignment:
| Q |
32 |
tcacgttataaagccaatcaaactcgatggaacctttggaaatgttagctctgaccagattggataggtttagaacctctctacctgtacgaatcacctt |
131 |
Q |
| |
|
||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
50814959 |
tcacgttataaagccaatcaaactcaagtaaaccattggaaatgttagctctgaccaaattggataggtttagaacctctctacctgtacgaatcaccat |
50814860 |
T |
|
| Q |
132 |
acaaagtgccgtaaggattacatcctttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgaca |
231 |
Q |
| |
|
|||| || ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| || | |||||||| |||||||| |
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| T |
50814859 |
acaacgtctcgtaactattacatcctttgcttccaactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgaca |
50814760 |
T |
|
| Q |
232 |
gattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttag |
331 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||| ||||||| ||| |
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| T |
50814759 |
gattctaagtgaaggacttttagcaagggaagatcaacgaaaggaa---cttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtag |
50814663 |
T |
|
| Q |
332 |
ttagaactaaagaaggcaatgtggttt |
358 |
Q |
| |
|
|||| | |||||||||| | |||||| |
|
|
| T |
50814662 |
ttaggatgaaagaaggcagtatggttt |
50814636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 32 - 358
Target Start/End: Original strand, 50860905 - 50861228
Alignment:
| Q |
32 |
tcacgttataaagccaatcaaactcgatggaacctttggaaatgttagctctgaccagattggataggtttagaacctctctacctgtacgaatcacctt |
131 |
Q |
| |
|
||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
50860905 |
tcacgttataaagccaatcaaactcaagtaaaccattggaaatgttagctctgaccaaattggataggtttagaacctctctacctgtacgaatcaccat |
50861004 |
T |
|
| Q |
132 |
acaaagtgccgtaaggattacatcctttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgaca |
231 |
Q |
| |
|
|||| || ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| || | |||||||| |||||||| |
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| T |
50861005 |
acaacgtctcgtaactattacatcctttgcttccaactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgaca |
50861104 |
T |
|
| Q |
232 |
gattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttag |
331 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||| ||||||| ||| |
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|
| T |
50861105 |
gattctaagtgaaggacttttagcaagggaagatcaacgaaaggaa---cttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtag |
50861201 |
T |
|
| Q |
332 |
ttagaactaaagaaggcaatgtggttt |
358 |
Q |
| |
|
|||| | |||||||||| | |||||| |
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|
| T |
50861202 |
ttaggatgaaagaaggcagtatggttt |
50861228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 142 - 400
Target Start/End: Complemental strand, 39558976 - 39558718
Alignment:
| Q |
142 |
gtaaggattacatcctttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagt |
241 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| ||| || ||| ||| || | ||| |||||||| ||||| |
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|
| T |
39558976 |
gtaatgattaaatcctttgcttccaactcctctagaatgggacagccggatagaagtttcatgatgtactcataatgtgggaaaccgacagattctaagt |
39558877 |
T |
|
| Q |
242 |
gaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaa |
341 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| || |
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|
| T |
39558876 |
gaaggacttttagcaagggaagattaacgaaaggaa---cttcgttcaatgttacactcttcaatttgaggactgtcaaggttttggtagttagaaccaa |
39558780 |
T |
|
| Q |
342 |
agaaggcaatgtggttttggattta---tggcagagatcgatgcttaggttttcaactcctc |
400 |
Q |
| |
|
|| ||||| | || | | ||| ||| | |||||||| ||||||||||||||||||||||| |
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|
| T |
39558779 |
agcaggcagtatgatatcggagttatacttgcagagattgatgcttaggttttcaactcctc |
39558718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 157 - 399
Target Start/End: Complemental strand, 50814561 - 50814322
Alignment:
| Q |
157 |
tttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg |
256 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||| | || |||| | ||||| || ||||||||| ||||||||| |||||||| | |
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|
| T |
50814561 |
tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtg |
50814462 |
T |
|
| Q |
257 |
agggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggt |
356 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||| |
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|
| T |
50814461 |
agggaagatcaacgaaaggaacttc---gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggt |
50814365 |
T |
|
| Q |
357 |
tttggatttatggcagagatcgatgcttaggttttcaactcct |
399 |
Q |
| |
|
|| | ||||||||||| ||||||||||||||||||||| |
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|
| T |
50814364 |
ttcgttaagatggcagagatttatgcttaggttttcaactcct |
50814322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 157 - 399
Target Start/End: Original strand, 50861303 - 50861542
Alignment:
| Q |
157 |
tttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg |
256 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||| | || |||| | ||||| || ||||||||| ||||||||| |||||||| | |
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|
| T |
50861303 |
tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtg |
50861402 |
T |
|
| Q |
257 |
agggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggt |
356 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||| |
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|
| T |
50861403 |
agggaagatcaacgaaaggaacttc---gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggt |
50861499 |
T |
|
| Q |
357 |
tttggatttatggcagagatcgatgcttaggttttcaactcct |
399 |
Q |
| |
|
|| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
50861500 |
ttcgttaagatggcagagatttatgcttaggttttcaactcct |
50861542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 157 - 314
Target Start/End: Original strand, 49857434 - 49857591
Alignment:
| Q |
157 |
tttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg |
256 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||| |||||| ||||| || |||||||| ||| ||| |||| |||||||| | ||| |||| |
|
|
| T |
49857434 |
tttgcttccaactcttgtagaatgggacatccagataaaagttttctgatatgtccataatatgtgaaacagacggattccaagtgaaggattttgagcg |
49857533 |
T |
|
| Q |
257 |
agggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggac |
314 |
Q |
| |
|
| |||||||| || |||||| |||| | ||||||||||| |||||||||||||||||| |
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|
| T |
49857534 |
acggaagatcaaccaaaggaccttcatagttcaatgttatcctcttcaatttgaggac |
49857591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 400
Target Start/End: Original strand, 49868709 - 49868793
Alignment:
| Q |
316 |
gtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcctc |
400 |
Q |
| |
|
|||||||||||| |||| ||||| |||| ||||||||| |||||||| | | |||||||||||||| ||||||||| |||||||| |
|
|
| T |
49868709 |
gtcaaggttttggtagtaagaacgaaagtaggcaatgtagttttggagtaaaggcagagatcgatggttaggtttttaactcctc |
49868793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 314
Target Start/End: Original strand, 49760622 - 49760738
Alignment:
| Q |
195 |
aagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgtt |
294 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||| || |||||||| |||| ||||| |||||||| ||| | |||| || | |||||||| |
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|
| T |
49760622 |
aagtttcaagatatattcataatatgtgtaagtgacaagttccaagtgaagggctttgagcgaaggaagatcaacgtacggaa---ctccagtcaatgtt |
49760718 |
T |
|
| Q |
295 |
accctcttcaatttgaggac |
314 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
49760719 |
atcctcttcaatttgaggac |
49760738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 31211027 - 31210971
Alignment:
| Q |
291 |
tgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaagg |
347 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| || ||||||| |||||||| |
|
|
| T |
31211027 |
tgttacgctcttcaatttgaggaatgtcaaggttttggtatttagaaccaaagaagg |
31210971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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