View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1046_low_14 (Length: 352)
Name: NF1046_low_14
Description: NF1046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1046_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 25659353 - 25659485
Alignment:
| Q |
48 |
ctccaaaaaacaatttatcattgaaaatcgaatgcaatatgtattcttcaatgttctttaaaaaagaatgtattatgtgatattctttattttttgaata |
147 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
25659353 |
ctccaaaaaataatttatcattgaaaatcgaatgaaatatgtattcttcaatattctttaaaaaataatgtattatgtgatattctttatttttggaata |
25659452 |
T |
|
| Q |
148 |
atatagatttttctccactttatcatagtatat |
180 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
25659453 |
atatagatttttctccactttatcatagtatat |
25659485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 25665758 - 25665890
Alignment:
| Q |
48 |
ctccaaaaaacaatttatcattgaaaatcgaatgcaatatgtattcttcaatgttctttaaaaaagaatgtattatgtgatattctttattttttgaata |
147 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
25665758 |
ctccaaaaaataatttatcattgaaaatcgaatgaaatatgtattcttcaatattctttaaaaaataatgtattatgtgatattctttatttttggaata |
25665857 |
T |
|
| Q |
148 |
atatagatttttctccactttatcatagtatat |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
25665858 |
atatagatttttctccactttatcatagtatat |
25665890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 25672163 - 25672295
Alignment:
| Q |
48 |
ctccaaaaaacaatttatcattgaaaatcgaatgcaatatgtattcttcaatgttctttaaaaaagaatgtattatgtgatattctttattttttgaata |
147 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
25672163 |
ctccaaaaaataatttatcattgaaaatcgaatgaaatatgtattcttcaatattctttaaaaaataatgtattatgtgatattctttatttttggaata |
25672262 |
T |
|
| Q |
148 |
atatagatttttctccactttatcatagtatat |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
25672263 |
atatagatttttctccactttatcatagtatat |
25672295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 25678568 - 25678710
Alignment:
| Q |
48 |
ctccaaaaaacaatttatcattgaaaatcgaatgcaatatgtattcttcaatgttctttaaaaaagaatgtattatgtgatattctttattttttgaata |
147 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
25678568 |
ctccaaaaaataatttatcattgaaaatcgaatgaaatatgtattcttcaatattctttaaaaagtaatgtattatgtgatattctttatttttggaata |
25678667 |
T |
|
| Q |
148 |
atatagatttttctccactttatcatagtatatcattaaaact |
190 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| || ||||| |
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|
| T |
25678668 |
atatagatttttctccactttatcataatatatctttgaaact |
25678710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 218 - 336
Target Start/End: Original strand, 25659488 - 25659604
Alignment:
| Q |
218 |
ctttgaaactcaaaacagtgaagaaccttggcc-ataaattatgaataacatgcttatctactactattactttcaaattgttgattgtcattaccaaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
25659488 |
ctttgaaactcaaaacagtgaagaaccttgacctataaattatgaataccatacttatctac---tattactttcaaattgttgattgtcattaccaaat |
25659584 |
T |
|
| Q |
317 |
tttatacattcagttctaaa |
336 |
Q |
| |
|
||| |||||||||||||||| |
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|
| T |
25659585 |
tttctacattcagttctaaa |
25659604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 218 - 336
Target Start/End: Original strand, 25665893 - 25666009
Alignment:
| Q |
218 |
ctttgaaactcaaaacagtgaagaaccttggcc-ataaattatgaataacatgcttatctactactattactttcaaattgttgattgtcattaccaaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
25665893 |
ctttgaaactcaaaacagtgaagaaccttgacctataaattatgaataccatacttatctac---tattactttcaaattgttgattgtcattaccaaat |
25665989 |
T |
|
| Q |
317 |
tttatacattcagttctaaa |
336 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
25665990 |
tttctacattcagttctaaa |
25666009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 218 - 336
Target Start/End: Original strand, 25672298 - 25672414
Alignment:
| Q |
218 |
ctttgaaactcaaaacagtgaagaaccttggcc-ataaattatgaataacatgcttatctactactattactttcaaattgttgattgtcattaccaaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
25672298 |
ctttgaaactcaaaacagtgaagaaccttgacctataaattatgaataccatacttatctac---tattactttcaaattgttgattgtcattaccaaat |
25672394 |
T |
|
| Q |
317 |
tttatacattcagttctaaa |
336 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
25672395 |
tttctacattcagttctaaa |
25672414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 218 - 336
Target Start/End: Original strand, 25678701 - 25678817
Alignment:
| Q |
218 |
ctttgaaactcaaaacagtgaagaaccttggcc-ataaattatgaataacatgcttatctactactattactttcaaattgttgattgtcattaccaaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
25678701 |
ctttgaaactcaaaacagtgaagaaccttgacctataaattatgaataccgtgcttatctac---tattactttcaaattgttgattgtcattaccaaat |
25678797 |
T |
|
| Q |
317 |
tttatacattcagttctaaa |
336 |
Q |
| |
|
||| |||||| ||||||||| |
|
|
| T |
25678798 |
tttctacattgagttctaaa |
25678817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 25685257 - 25685342
Alignment:
| Q |
251 |
ataaattatgaataacatgcttatctactactattactttcaaattgttgattgtcattaccaaattttatacattcagttctaaa |
336 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
25685257 |
ataatttatgaataacatgcttatctactactattactttcaaattgttgattgtcattaccaaattttatacattcaattctaaa |
25685342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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