View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1046_low_2 (Length: 675)
Name: NF1046_low_2
Description: NF1046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1046_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 535; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 30 - 599
Target Start/End: Complemental strand, 27025837 - 27025268
Alignment:
| Q |
30 |
gattactcactcaggacaggccaagaacgtggccagtggatgccagcaggagatgcaaggaaaatctggaatttcatctgctatgcaggctcttgatctt |
129 |
Q |
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| T |
27025837 |
gattactcactcaggacaggccaagaacgtggccagtggatgccagcaggagacgcaaggaaaatctggaatttcatctgctatgcaggctcttgatctt |
27025738 |
T |
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| Q |
130 |
cagaagaccaaagtttctggccaggatgtgcttcattcaaattctacttcagctggggttgctgttatttgaatatatttcaaaaaccaagagatgatgc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27025737 |
cagaagaccaaagtttctggccaggatgtgcttcattcaaattctacttcagctggggttgctgtcatttgaatatatttcaaaaaccaagagatgatgc |
27025638 |
T |
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| Q |
230 |
ctcttttatagcttagcttgtgatgtggtggttgaaacttccaagtatacagatatctgatattgtaatatacttgattttagacttctttgagnnnnnn |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27025637 |
ctcttttatagcttagcttgtgatgtggtggttgaaacttccaagtatacagatatctgatattgtaatatacttgattttagacttctttgagtttttt |
27025538 |
T |
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| Q |
330 |
nnnaggatttgttctgcagactgcatcatattttctagccttttgatgtgaatacacagtgatggtacattcagccttttcaatttgattgtgaatatgc |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27025537 |
tttaggatttgttctgcagactgcatcatattttctagccttttgatgtgaatacacagtgatggtacattcagccttttcaatttgattgtgaatatgc |
27025438 |
T |
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| Q |
430 |
agtgatgatattgatacattcagccttttcagtttgattgtgaatggtgatatggtaacatttggataatgaaacatataggagaaccaggttttgttga |
529 |
Q |
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| T |
27025437 |
agtgatgatattgatacattcagccttttcagtttgattgtgaatggtgatatggtaacatttggataatgaaacatataggagaaccaggttttgttga |
27025338 |
T |
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| Q |
530 |
ctttgagaatcatgtctcaaagggtagaaaaattaattctagatatatgtataatgtatgtatagtatta |
599 |
Q |
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| T |
27025337 |
ctttgagaatcatgtctcaaagggtagaaaaattaattctagatatatgtataatgtatgtatagtatta |
27025268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 27056571 - 27056450
Alignment:
| Q |
90 |
aaaatctggaatttcatctgctatgcaggctcttgatcttcagaagaccaaagtttctggccaggatgtgcttcattcaaattctacttcagctggggtt |
189 |
Q |
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| T |
27056571 |
aaaatctggaatttcatctgctatgcaggctctggattttca-------------tctggccaggacgtgcttcattcaaattctacttcagctggggtt |
27056485 |
T |
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| Q |
190 |
gctgttatttgaatatatttcaaaaaccaagagat |
224 |
Q |
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| T |
27056484 |
gctgtcatttgaatatatttcaaaaacctagagat |
27056450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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