View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1046_low_21 (Length: 226)
Name: NF1046_low_21
Description: NF1046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1046_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 24748431 - 24748529
Alignment:
| Q |
1 |
ttgattatcagcattgttcacttcaccctctacccactcagatccttcacccactacaacagtctctgtctcagcatttactccatttccacctacctca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24748431 |
ttgattatcagcattgttcacttcaccctctacccactcagatccttcacccact---acagtctctgtctcagcatttactccatttccacctacctca |
24748527 |
T |
|
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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 26448194 - 26448096
Alignment:
| Q |
1 |
ttgattatcagcattgttcacttcaccctctacccactcagatccttcacccactacaacagtctctgtctcagcatttactccatttccacctacctca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26448194 |
ttgattatcagcattgttcacttcaccctctacccactcagatccttcacccatt---acagtctctctctcagcatttactccatttccacctacctca |
26448098 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 24500381 - 24500483
Alignment:
| Q |
1 |
ttgattatcagcattgttcacttcaccctctacccactcagatccttcacccactacaacagtctctgtctcagcatttactccatttccacctacctca |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24500381 |
ttgattatcaacattgttcacttcaccctttacccactcagatccttcacccact---acagtctctgtctcaacatttactccatttccacctacctca |
24500477 |
T |
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| Q |
101 |
ctgtct |
106 |
Q |
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|||||| |
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|
| T |
24500478 |
ctgtct |
24500483 |
T |
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