View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1046_low_22 (Length: 201)
Name: NF1046_low_22
Description: NF1046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1046_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 2084452 - 2084334
Alignment:
| Q |
1 |
tgtacgaccaagaactgtatctgatcctggtgaaactgtacacgtgtatctgactgtgctgatggagtcctcccaggaggtagctgcaagaatctagtct |
100 |
Q |
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| T |
2084452 |
tgtacgaccaagaactgtatctgatcctggtgaaactgtacacgtgtatctgactgtgctgatggagtcctcccaggaggtagctgcaagaatctagtct |
2084353 |
T |
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| Q |
101 |
tctgtttttcccatccgtc |
119 |
Q |
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| T |
2084352 |
tctgtttttcccatccgtc |
2084334 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 44872426 - 44872514
Alignment:
| Q |
25 |
tcctggtgaaactgtacacgtgtatctgactgtgctgatggagtcctcccaggaggtagctgcaagaatctagtcttctgtttttccca |
113 |
Q |
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||||| ||||| ||||| |||||||||| |||||| | |||||||||||||| ||| | |||||||||||| ||||||| || ||||| |
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| T |
44872426 |
tcctgatgaaattgtacccgtgtatctgcctgtgcaggtggagtcctcccagcaggaaattgcaagaatctattcttctgcttctccca |
44872514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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