View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10470_high_1 (Length: 658)
Name: NF10470_high_1
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10470_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 538; Significance: 0; HSPs: 21)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 17 - 647
Target Start/End: Complemental strand, 30385002 - 30384352
Alignment:
| Q |
17 |
catagttcgcagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30385002 |
catagttcgcagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttc |
30384903 |
T |
|
| Q |
117 |
gagcaaggccaattacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaagattaatgttacatgttaaggccaagcaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30384902 |
gagcaaggccaattacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaagattaatgttacatgttaaggccaagcaac |
30384803 |
T |
|
| Q |
217 |
aaaatagtctcgataaacaacaaaaccagtttgtcttgaggcttatactgaatacaagattagtgttagtatttccggacaaaagatgcaactgttgatt |
316 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
30384802 |
aaaaaagtctcgataaacaacaaaaccagtttgtcttgaggcttatagtgaatacaagattagtgttagaatttccggacaaaagatgcaactcttgatt |
30384703 |
T |
|
| Q |
317 |
aaaattctacgaaaatgcaactc--------------------atacaacaatacttacgatctttaggttatttagcccatcaaaatctggttttcggt |
396 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30384702 |
aaaattctacgaaaatgaaactcatatcatgagtgtgaagataataaaacaatacttacgatctttaggttatttagcccatcaaaatctggttttctgt |
30384603 |
T |
|
| Q |
397 |
tgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtctt |
496 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30384602 |
tgccaaagacatgtaacacttcctcccttgcacgggtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaaccgaagtagtctc |
30384503 |
T |
|
| Q |
497 |
ttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgattt |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30384502 |
ttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgattt |
30384403 |
T |
|
| Q |
597 |
gactcaagaagaatgctcaataagtcattcctactgggctcacctgccttt |
647 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30384402 |
gactcaagaagaatgctcaataagtcattcctagtgggctcacctgccttt |
30384352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 349 - 647
Target Start/End: Complemental strand, 30395084 - 30394786
Alignment:
| Q |
349 |
tacttacgatctttaggttatttagcccatcaaaatctggttttcggttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcagggta |
448 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30395084 |
tacttacaatctttaggttatttagcccatcaaaatctggttttttgttgccaaagacatgtaacacttcctccctagcacgtgtttgccaatcagggta |
30394985 |
T |
|
| Q |
449 |
cctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaagactc |
548 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||| | ||| |||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30394984 |
cctactcaacaatatcattgtccaaacaagcaaaaccgaagtagtttcttgccctgcaaaatggaacaacttgcattcctcgactacatgatcaagactc |
30394885 |
T |
|
| Q |
549 |
attcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgctcaataagtcattcctactgggctcacctgccttt |
647 |
Q |
| |
|
||||| ||| ||| ||||| | || | ||||||||||| ||||||| ||||||||||| ||||||||||||||| || ||| ||||| |||||| |
|
|
| T |
30394884 |
attccaacactcttattgttgttgttattttcaatttccttatgatttgattcaagaagaatactcaataagtcattcttagtggattcaccagccttt |
30394786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 30395754 - 30395573
Alignment:
| Q |
17 |
catagttcgcagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttc |
116 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||||||||||| ||||||| ||||||||| |
|
|
| T |
30395754 |
catagtttgcagtcatgatgaatcaaaagaattggtaagaaaacctccactccagcaggtaatgtcaggtttccaagtttcatatctttcacaacatttc |
30395655 |
T |
|
| Q |
117 |
gagcaaggccaattacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaagattaatgttac |
198 |
Q |
| |
|
|||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
30395654 |
tagcaagtcccattactggagggtataatctaagaacctcatacaaaatcatggtgacctgttacaaaaagatttatgttac |
30395573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 345 - 601
Target Start/End: Complemental strand, 30437349 - 30437093
Alignment:
| Q |
345 |
acaatacttacgatctttaggttatttagcccatcaaaatctggttttcggttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcag |
444 |
Q |
| |
|
||||||||||| ||||| || | | |||||||||||||||| ||||| ||||||||| || ||||| ||||||||||| ||||||| ||||||||||| |
|
|
| T |
30437349 |
acaatacttacaatcttaagatgacttagcccatcaaaatcgggtttattgttgccaaatacttgtaatacttcctcccttgcacgtgcttgccaatcag |
30437250 |
T |
|
| Q |
445 |
ggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaag |
544 |
Q |
| |
|
||||||||||||| || | |||||||||||||||||||| ||||| |||| | ||||||||||| ||| | |||||||||||| | |||||| ||||| |
|
|
| T |
30437249 |
ggtacctactcaacaacactattgtccaaacaagcaaaacagaagttgtctctgcacctgcaaagtagaatagcttgcattcctctattacatcgtcaag |
30437150 |
T |
|
| Q |
545 |
actcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactc |
601 |
Q |
| |
|
||||||||| |||| ||| ||||| |||| ||| || ||||| ||| |||||||||| |
|
|
| T |
30437149 |
actcattccaacattcttattgttgtcatgttcttccatttctttgtgatttgactc |
30437093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 345 - 601
Target Start/End: Complemental strand, 30469160 - 30468904
Alignment:
| Q |
345 |
acaatacttacgatctttaggttatttagcccatcaaaatctggttttcggttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcag |
444 |
Q |
| |
|
||||||||||| ||||| || | | ||||||| |||||||| ||||| |||||||||||| ||||| ||||| ||||| ||||| | ||||||||| | |
|
|
| T |
30469160 |
acaatacttacaatcttaagatgacttagcccgtcaaaatcaggtttattgttgccaaagacctgtaatacttcttcccttgcacgcgcttgccaatcgg |
30469061 |
T |
|
| Q |
445 |
ggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaag |
544 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||| ||||| |||| ||| |||||||||| ||| | |||||||||||| | ||||||||||| |
|
|
| T |
30469060 |
ggtacctactcaataacaccattgtccaaacaagcaaaacagaagtggtctcttggcctgcaaagtagaatagcttgcattcctctatcacatcatcaag |
30468961 |
T |
|
| Q |
545 |
actcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactc |
601 |
Q |
| |
|
||||||||| |||||||| ||||| ||| ||| || ||||| ||| |||||||||| |
|
|
| T |
30468960 |
actcattccgacatccttattgttgccatgttcttccatttctttgtgatttgactc |
30468904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 348 - 647
Target Start/End: Complemental strand, 30484080 - 30483781
Alignment:
| Q |
348 |
atacttacgatctttaggttatttagcccatcaaaatctggttttcggttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcagggt |
447 |
Q |
| |
|
|||||||| ||||| || | ||||| || ||||||||||||| | ||||||||| || |||| ||||||||| || ||||||| |||||||| ||||| |
|
|
| T |
30484080 |
atacttacaatcttaagatggtttagtccttcaaaatctggttgtttgttgccaaaaacttgtagcacttcctctcttgcacgtgcttgccaattagggt |
30483981 |
T |
|
| Q |
448 |
acctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaagact |
547 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || | || ||||||| || ||| | ||||||||||| || ||||||||||||| | |
|
|
| T |
30483980 |
gcctactcaataatacaattgtccaaacaagcaaaactgaagtggtttcttcccctgcaaggtagaatagcttgcattccttgattacatcatcaagatt |
30483881 |
T |
|
| Q |
548 |
cattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgctcaataagtcattcctactgggctcacctgccttt |
647 |
Q |
| |
|
|||||| |||| ||| ||||| | || || | |||||||||| ||||||||||||||||||| | |||||||||||| || ||| |||||||||||| |
|
|
| T |
30483880 |
cattccaacattcttattgttgttgttatctttaatttccttgtgatttgactcaagaagaatacctaataagtcattcttagtggcttcacctgccttt |
30483781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 347 - 647
Target Start/End: Complemental strand, 30425059 - 30424759
Alignment:
| Q |
347 |
aatacttacgatctttaggttatttagcccatcaaaatctggttttcggttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcaggg |
446 |
Q |
| |
|
||||||||||||||| || | | ||||||| ||||| || ||||| ||||||||| || ||||| ||||| ||||| |||||| ||||||||||||| |
|
|
| T |
30425059 |
aatacttacgatcttaagatgacttagcccgtcaaagtcaggtttattgttgccaaaaacttgtaatacttcttcccttgcacgttcttgccaatcaggg |
30424960 |
T |
|
| Q |
447 |
tacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaagac |
546 |
Q |
| |
|
||||||||||| || | ||||||||||||||||||||| ||||| |||| ||| |||||||||| ||| | |||||||||||| | |||||||||||||| |
|
|
| T |
30424959 |
tacctactcaacaacaccattgtccaaacaagcaaaacagaagtggtctcttggcctgcaaagtagaagagcttgcattcctctattacatcatcaagac |
30424860 |
T |
|
| Q |
547 |
tcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgctcaataagtcattcctactgggctcacctgcctt |
646 |
Q |
| |
|
||||||| |||| ||| ||||| | | ||| || ||||| ||| |||||||||| | ||| || | |||||||||| | || ||| ||||||||||| |
|
|
| T |
30424859 |
tcattccaacattcttattgttgccgtgttcttccatttctttgtgatttgactctaaaagtatacctaataagtcatccttagtggcttcacctgcctt |
30424760 |
T |
|
| Q |
647 |
t |
647 |
Q |
| |
|
| |
|
|
| T |
30424759 |
t |
30424759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 347 - 569
Target Start/End: Original strand, 8379527 - 8379749
Alignment:
| Q |
347 |
aatacttacgatctttaggttatttagcccatcaaaatctggttttcggttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcaggg |
446 |
Q |
| |
|
||||||||| ||||| || |||||||| || ||| | ||||||||| ||||||||| | ||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
8379527 |
aatacttacaatcttaagtttatttagtccttcatagtctggttttttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcaggg |
8379626 |
T |
|
| Q |
447 |
tacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaagac |
546 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| | |||||||| | ||| ||||| |||| ||| |||||||||||| | |||||||| ||||||| |
|
|
| T |
8379627 |
tacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttcaagac |
8379726 |
T |
|
| Q |
547 |
tcattcccacatccttgttgttt |
569 |
Q |
| |
|
||||||||| || |||||||||| |
|
|
| T |
8379727 |
tcattcccatattcttgttgttt |
8379749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 346 - 568
Target Start/End: Complemental strand, 30476121 - 30475899
Alignment:
| Q |
346 |
caatacttacgatctttaggttatttagcccatcaaaatctggttttcggttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcagg |
445 |
Q |
| |
|
|||||||||| ||||| || | ||||| |||||||||||||||||| ||||| ||||| || || ||||||||||| ||||| | |||||||||||| |
|
|
| T |
30476121 |
caatacttacaatcttaagttggtttagtccatcaaaatctggttttttattgccgaagacttgcaatacttcctcccttgcacgagcttgccaatcagg |
30476022 |
T |
|
| Q |
446 |
gtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaaga |
545 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||||| ||||| |||| ||| |||||||||| ||| | ||||||||| || | |||||| |||||| |
|
|
| T |
30476021 |
atacctactcaacaacatcattgcccaaacaagcaaaacagaagtggtctcttgccctgcaaagtagaatagcttgcattcttctattacatcgtcaaga |
30475922 |
T |
|
| Q |
546 |
ctcattcccacatccttgttgtt |
568 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
30475921 |
ctcattccgacatccttattgtt |
30475899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 347 - 568
Target Start/End: Complemental strand, 30431092 - 30430871
Alignment:
| Q |
347 |
aatacttacgatctttaggttatttagcccatcaaaatctggttttcggttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcaggg |
446 |
Q |
| |
|
||||||||||||||| || | | ||||||| ||||| |||||||| ||||||||| || ||||| ||||| ||||| |||||| ||||||||| || |
|
|
| T |
30431092 |
aatacttacgatcttaagatgacttagcccgtcaaattctggtttattgttgccaaatacttgtaatacttcttcccttgcacgttcttgccaatctggt |
30430993 |
T |
|
| Q |
447 |
tacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaagac |
546 |
Q |
| |
|
||||||||||| || | ||||||||||||||||||||| ||||| |||| ||| |||||||||| ||| | |||||||||||| | |||||||||||||| |
|
|
| T |
30430992 |
tacctactcaacaacaccattgtccaaacaagcaaaacagaagtggtctcttgtcctgcaaagtagaagagcttgcattcctctattacatcatcaagac |
30430893 |
T |
|
| Q |
547 |
tcattcccacatccttgttgtt |
568 |
Q |
| |
|
||||||| |||| ||| ||||| |
|
|
| T |
30430892 |
tcattccaacattcttattgtt |
30430871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 347 - 555
Target Start/End: Original strand, 23783711 - 23783919
Alignment:
| Q |
347 |
aatacttacgatctttaggttatttagcccatcaaaatctggttttcggttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcaggg |
446 |
Q |
| |
|
||||||||| ||||| || |||||||| |||||||| || |||||| |||||||| | | ||| ||||||| ||| |||||| ||||||||||||| |
|
|
| T |
23783711 |
aatacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttccttgcacgttcttgccaatcaggg |
23783810 |
T |
|
| Q |
447 |
tacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaagac |
546 |
Q |
| |
|
||||||||||| || | ||| ||||||||||||||| |||||||||||| ||| ||||||| ||||| ||| |||||||| ||||||| || ||||||| |
|
|
| T |
23783811 |
tacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaacatggaataacctgcattccccgactacttcttcaagac |
23783910 |
T |
|
| Q |
547 |
tcattccca |
555 |
Q |
| |
|
||| ||||| |
|
|
| T |
23783911 |
tcaatccca |
23783919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 30437575 - 30437406
Alignment:
| Q |
17 |
catagttcgcagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttc |
116 |
Q |
| |
|
||||||||| |||||||||||| |||| || |||||| ||| | |||||| ||||||| |||||| |||||||||||||||||||| | |||| ||| |
|
|
| T |
30437575 |
catagttcggagtcatggtgaactaaaactatcggtaaggtaatttgcactccggcaggtaatgttaggtttccaagtttcacatctttgtgaacacttc |
30437476 |
T |
|
| Q |
117 |
gagcaaggccaattacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaa |
186 |
Q |
| |
|
||||||| | ||||| || |||||||||||||||||||| ||||||||||| ||||||| || |||||| |
|
|
| T |
30437475 |
gagcaagttcgattactggtgggtataacctaagaacctcgtacaaaatcatcgtgacctgtctcaaaaa |
30437406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 347 - 555
Target Start/End: Complemental strand, 23768360 - 23768152
Alignment:
| Q |
347 |
aatacttacgatctttaggttatttagcccatcaaaatctggttttcggttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcaggg |
446 |
Q |
| |
|
||||||||| ||||| || |||||||| |||||||| ||||||||| |||||||| | | ||| ||||||| || |||||| ||||||||| ||| |
|
|
| T |
23768360 |
aatacttacaatcttaagtttatttagtccatcaaagtctggtttttcattgccaaatatctctaatacttccttccgggcacgttcttgccaatctggg |
23768261 |
T |
|
| Q |
447 |
tacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaagac |
546 |
Q |
| |
|
| ||||||||| || | ||| ||||||||||||||| |||||||||||| ||| ||||||| ||||| ||| |||||||| ||||||| || ||||||| |
|
|
| T |
23768260 |
tgcctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaatatggaataacatgcattccccgactacttcttcaagac |
23768161 |
T |
|
| Q |
547 |
tcattccca |
555 |
Q |
| |
|
||| ||||| |
|
|
| T |
23768160 |
tcaatccca |
23768152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 30469375 - 30469217
Alignment:
| Q |
28 |
gtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaaggcca |
127 |
Q |
| |
|
||||||||||| || || || | |||||||| || |||||| || || | || ||| ||||||||||| |||||||| | ||| |||||||||| | |
|
|
| T |
30469375 |
gtcatggtgaaccataattatcgataagaaaacctgcactccggctggcaatgctaggtttccaagtttaacatctttgtgaactcttcgagcaagtgcg |
30469276 |
T |
|
| Q |
128 |
attacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaa |
186 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
30469275 |
attactggtgggtataacctaagaacctcatacaaaatcatggtgacctgtctcaaaaa |
30469217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 23783460 - 23783613
Alignment:
| Q |
17 |
catagttcgcagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttc |
116 |
Q |
| |
|
|||||||| || |||||||||||||||| |||||| | | ||| ||||| ||||||| || ||| | | ||||||||| | ||| |||||||| |||| |
|
|
| T |
23783460 |
catagttcacaatcatggtgaatcaaaacaattggcatgtaaacctccattccagcatataatgtcaagtctccaagttttatatcattctcaacttttc |
23783559 |
T |
|
| Q |
117 |
gagcaaggccaattacgggagggtataacctaagaacctcatacaaaatcatgg |
170 |
Q |
| |
|
|||||| ||| |||| |||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
23783560 |
gagcaacgccggttacaggagggtacaacctcaaaacctcatacaaaatcatgg |
23783613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 30425276 - 30425128
Alignment:
| Q |
28 |
gtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaaggcca |
127 |
Q |
| |
|
||||||||||| ||||| || | |||||||| || |||||| || || | || ||| ||||||||| |||||||||| | |||| |||||||||| | |
|
|
| T |
30425276 |
gtcatggtgaaccaaaattatcgataagaaaacctgcactccggctggcaatgctaggtttccaagtatcacatctttgtgaacacttcgagcaagcgcg |
30425177 |
T |
|
| Q |
128 |
attacgggagggtataacctaagaacctcatacaaaatcatggtgacct |
176 |
Q |
| |
|
||| | || |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
30425176 |
attgctggtgggtataacctaagaacctcgtacaaaatcatagtgacct |
30425128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 30431309 - 30431161
Alignment:
| Q |
28 |
gtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaaggcca |
127 |
Q |
| |
|
||||||||||| ||||| || | |||||||| || |||||| ||||||| |||||| ||||||||| ||| |||||| | | || |||||| ||| | |
|
|
| T |
30431309 |
gtcatggtgaaccaaaattatcgataagaaaacctgcactcctgcaggtaatgttaggtttccaagtgtcatatctttgtgatcacttcgagtaagcgcg |
30431210 |
T |
|
| Q |
128 |
attacgggagggtataacctaagaacctcatacaaaatcatggtgacct |
176 |
Q |
| |
|
||| | || |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
30431209 |
atttctggtgggtataacctaagaacctcgtacaaaatcatagtgacct |
30431161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 30476527 - 30476368
Alignment:
| Q |
17 |
catagttcgcagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttc |
116 |
Q |
| |
|
||||||||| |||||||||||| ||||| || |||||| ||| | |||||| || |||| |||||| ||||||||||| |||||||| | | | ||| |
|
|
| T |
30476527 |
catagttcggagtcatggtgaaccaaaactatcggtaaggtaatttgcactccggctggtaatgttaggtttccaagtttgacatctttgtgagtacttc |
30476428 |
T |
|
| Q |
117 |
gagcaaggc-caattacgggagggtataacctaagaacctcatacaaaatcatggtgacct |
176 |
Q |
| |
|
||| ||| | | ||| |||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30476427 |
gag-aagtcgcgattgcgggtgggtataatctaagaacctcatacaaaatcatggtgacct |
30476368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 414 - 487
Target Start/End: Complemental strand, 30403983 - 30403910
Alignment:
| Q |
414 |
acttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactga |
487 |
Q |
| |
|
|||||||| || || |||| |||||||||||| || |||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
30403983 |
acttcctctctagctcgtgcttgccaatcaggatatctactcaacaatatcattgtccaaacaagcagaactga |
30403910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 30484585 - 30484532
Alignment:
| Q |
137 |
gggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaagatt |
190 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
30484585 |
gggtataaccttagaacctcatacaaaatcatggtcatctgtcacaaaaagatt |
30484532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 23768622 - 23768470
Alignment:
| Q |
17 |
catagttcgcagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttc |
116 |
Q |
| |
|
|||||||| || |||||||||||||||| ||| || ||| ||| |||| ||||||| || ||| | | ||||||||| | ||| |||||||| |||| |
|
|
| T |
23768622 |
catagttcacaatcatggtgaatcaaaacaatcggcaagtaaacatccattccagcatataatgtcaagtctccaagttttatatcattctcaacttttc |
23768523 |
T |
|
| Q |
117 |
gagcaaggccaattacgggagggtataacctaagaacctcatacaaaatcatg |
169 |
Q |
| |
|
||| || ||| ||| |||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
23768522 |
gagaaacgccggttataggagggtacaacctcaaaacctcatacaaaatcatg |
23768470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 348 - 590
Target Start/End: Original strand, 41627756 - 41627998
Alignment:
| Q |
348 |
atacttacgatctttaggttatttagcccatcaaaatctggttttcggttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcagggt |
447 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||||| || | || |||||| ||||||| |
|
|
| T |
41627756 |
atacttacaatcttcaagttatttagcccatcaaaattaggttttttgttgccaaagatttgtaatacttcctcccttgcccttgcttgccactcagggt |
41627855 |
T |
|
| Q |
448 |
acctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaagact |
547 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||| ||||||||||| ||| |||||||||| ||||||||||||||||| | |||||| |||| | | |
|
|
| T |
41627856 |
acctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaaagtagaacaacttgcattcctgaattacatcttcaatatt |
41627955 |
T |
|
| Q |
548 |
cattcccacatccttgttgttttcattttcgtcaatttccttg |
590 |
Q |
| |
|
||||||||||| | ||||||| ||| ||| | |||||||||| |
|
|
| T |
41627956 |
cattcccacattcacgttgtttccatgttctttaatttccttg |
41627998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 41626965 - 41627122
Alignment:
| Q |
29 |
tcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaaggccaa |
128 |
Q |
| |
|
|||||||| | ||| | |||||| | ||||| |||||||||||||| || |||||| |||||||||||||||| ||| ||||| ||||| | ||| ||| |
|
|
| T |
41626965 |
tcatggtgcaacaatataattggcatgaaaacctccactccagcagataatgttaggtttccaagtttcacatttttttcaacgtttcgcgaaagctcaa |
41627064 |
T |
|
| Q |
129 |
ttacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaa |
186 |
Q |
| |
|
||| |||||| ||||| || | ||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
41627065 |
ttatgggaggatataatctcataacctcatacaaaatcatggtaacctatgacaaaaa |
41627122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 15844625 - 15844676
Alignment:
| Q |
127 |
aattacgggagggtataacctaagaacctcatacaaaatcatggtgacctat |
178 |
Q |
| |
|
|||||| |||||||||||||| || ||||| |||||||||||||| |||||| |
|
|
| T |
15844625 |
aattacaggagggtataaccttagtacctcgtacaaaatcatggtaacctat |
15844676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 531
Target Start/End: Original strand, 15852326 - 15852443
Alignment:
| Q |
414 |
acttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtgga |
513 |
Q |
| |
|
||||||| ||| |||||| |||||| ||||| ||||| | ||||| | |||||||||||| |||||| |||||| |||| ||| ||||| |||| | |
|
|
| T |
15852326 |
acttcctgccttgcacgttcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaacttgaagtggtctcttgccctgccaagtaaa |
15852425 |
T |
|
| Q |
514 |
acaacttgcattcctcga |
531 |
Q |
| |
|
|||| |||||||| |||| |
|
|
| T |
15852426 |
acaatttgcattcatcga |
15852443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 482
Target Start/End: Original strand, 15859313 - 15859381
Alignment:
| Q |
414 |
acttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaa |
482 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||| ||||| | ||||| | |||||||||||| |||||| |
|
|
| T |
15859313 |
acttcctcccttgcacgtgcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaa |
15859381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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