View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10470_high_19 (Length: 239)
Name: NF10470_high_19
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10470_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 38057875 - 38057998
Alignment:
| Q |
1 |
ccatcctatgattaaaaaacaacaagatcagacgctgctctgtgatagg-taggcatc----aatattatgttgtatgtcctatagtgtaaaatctcata |
95 |
Q |
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| T |
38057875 |
ccatcctatgattaaaaaacaacaagatcagacgctgctctgtgataggataggcatcgatcaatattatgttgtatgtcctatagtgtaaaatctcata |
38057974 |
T |
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| Q |
96 |
taatctcaacataaagtaatatta |
119 |
Q |
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| T |
38057975 |
taatctcaacataaagtaatatta |
38057998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 38058076 - 38058112
Alignment:
| Q |
186 |
gaatttaatattttttatttaccaaagatccactcta |
222 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
38058076 |
gaatttcatattttttatttaccaaagatccactcta |
38058112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 38051715 - 38051763
Alignment:
| Q |
16 |
aaaacaacaagatcagacgctgctctgtgata--ggtaggcatcaatat |
62 |
Q |
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|||||||||||||||||||||||| ||||||| | ||||||||||||| |
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| T |
38051715 |
aaaacaacaagatcagacgctgctatgtgatactgataggcatcaatat |
38051763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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