View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10470_high_2 (Length: 637)
Name: NF10470_high_2
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10470_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 18 - 632
Target Start/End: Original strand, 48414574 - 48415188
Alignment:
| Q |
18 |
gttaccactttcttcaattcattgcagccttcatatgctctataagtttatttgagttatgcttttaactatatatctttggttcaatgcaggcatcctg |
117 |
Q |
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| T |
48414574 |
gttaccactttcttcaattcattgcagccttcatatgctctataagtttatttgagttatgcttttaactatatatctttggttcaatgcaggcatcctg |
48414673 |
T |
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| Q |
118 |
accattcacttacttttacatctcaaccaaagttcaggatatgcaaactaatcatattaaaactacatcattattgatggttgcagttgtgacatgcatt |
217 |
Q |
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| T |
48414674 |
accattcacttacttttacatctcaaccaaagttcaggatatgcaaactaatcatattaaaactacatcattattgatggttgcagttgtgacatgcatt |
48414773 |
T |
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| Q |
218 |
cagcattttctgcaaatgaatgtagttggcaaatttcaatctttctttcaacacaaactaaaactacatctataataaaatttaaataatccttacatta |
317 |
Q |
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| T |
48414774 |
cagcattttctgcaaatgaatgtagttggcaaatttcaatctttctttcaacacaaactaaaactacatctataataaaatttaaataatccttacatta |
48414873 |
T |
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| Q |
318 |
atcttctattctattactgtcactgactagaaaatcttcgacctgttattttctcaatgctggaaacaatggaagattctctccgtttagcaaaatcacg |
417 |
Q |
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| T |
48414874 |
atcttctattctattactgtcactgactagaaaatcttcgacctgttattttctcaatgctggaaacaatggaagattctctccgtttagcaaaatcacg |
48414973 |
T |
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| Q |
418 |
ctcacgtgctttcatcacagcttctctttcgtatatttcactttcttcacgcctccaattttcttccctctgcatcctttctttttccattctatcaatc |
517 |
Q |
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| T |
48414974 |
ctcacgtgctttcatcacagcttctctttcgtatatttcactttcttcccgcctccaattttcttccctctgcatcctttctttttccattctatcaatc |
48415073 |
T |
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| Q |
518 |
acctccaacaatttattctgaagaacctcttggtgattaaccacagttttggtcaatcttttaaagaacactctcatcaaactcatttcttccttcagtc |
617 |
Q |
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| T |
48415074 |
acctccaacaatttattctgaagaacctcttggtgattaaccacagttttggtcaatcttttaaagaacactctcatcaaactcatttcttccttcagtc |
48415173 |
T |
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| Q |
618 |
tcttcctttgcttct |
632 |
Q |
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| T |
48415174 |
tcttcttttgcttct |
48415188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 48403658 - 48403722
Alignment:
| Q |
249 |
aatttcaatctttctttcaacacaaactaaaactacatctataataaaatttaaataatccttaca |
314 |
Q |
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| T |
48403658 |
aatttcaatctttttttcaacacaaactcaaattgcattta-aataaaattgaaataatacttaca |
48403722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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