View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10470_high_3 (Length: 458)
Name: NF10470_high_3
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10470_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Complemental strand, 12158918 - 12158490
Alignment:
| Q |
19 |
atagagtcattttatattcattagacaattaatatcctactattggaccacacaagtttagtattgggtccaaaatttgaagtaaaccataaacatacaa |
118 |
Q |
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| T |
12158918 |
atagagtcattttatattcattagacaattaatatcctactattggaccacacaagtttagtattgggtccaaaatttgaagtaaaccataaacatacaa |
12158819 |
T |
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| Q |
119 |
atgaaatatgcttatatgacaacaatgaatgtagtaatagagacacttacatgacatttttcgcagtccaaagaatgctatatctatgatatcctttagt |
218 |
Q |
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| T |
12158818 |
atgaaatatgcttatatgacaacaatgaatgtagtaatagagacacttacatgacatttttcgcagtccaaagaatgctatatctatgatatcctttagt |
12158719 |
T |
|
| Q |
219 |
tgggtcgaaccaaagacgataacgctcctcacgaccacggtgagtacttccatttccatacaagtttgtttgaaaccgccatggttttccagctatgtta |
318 |
Q |
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| T |
12158718 |
tgggtcgaaccaaagacgataacgttcctcacgtccacggtgagtacttccatttccatacaagtttgtttgaaaccgccatggttttccagctatgtta |
12158619 |
T |
|
| Q |
319 |
cctaggaactcaaaatccaactcatcgtgggttttctcaaacacatcaccgtttgatgtctgtaacaacaacaaaaatacaaaagttaacgtcaaaagta |
418 |
Q |
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| T |
12158618 |
cctaggaactcaaaatccaactcatcgtgggttttctcaaacacatcaccgtttgatgtctgtaacaacaacaaaaatacaaaagttaacgtcaaaagta |
12158519 |
T |
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| Q |
419 |
tataacaaaactgttccgtttcatttcat |
447 |
Q |
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| T |
12158518 |
tataacaaaactgttccgtttcatttcat |
12158490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 184 - 335
Target Start/End: Complemental strand, 37736737 - 37736592
Alignment:
| Q |
184 |
gtccaaagaatgctatatctatgatatcctttagttgggtcgaaccaaagacgataacgctcctcacgaccacggtgagtacttccatttccatacaagt |
283 |
Q |
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||||| ||||||||||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||| || ||||||||||| |||||| |
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| T |
37736737 |
gtccagagaatgctatatctatgatattctttggttgggtcgaaccagagatcgtaacgctcctcacgaccac------tagttccatttccaaacaagt |
37736644 |
T |
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| Q |
284 |
ttgtttgaaaccgccatggttttccagctatgttacctaggaactcaaaatc |
335 |
Q |
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||||||| ||| ||||||||||||||||| | ||||| ||||| |||||||| |
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| T |
37736643 |
ttgtttggaactgccatggttttccagctttattacccaggaattcaaaatc |
37736592 |
T |
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