View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10470_high_4 (Length: 455)
Name: NF10470_high_4
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10470_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 39820015 - 39819587
Alignment:
| Q |
17 |
aaaactaaattcataatcgtttattcgtttcaatttgttcatattattagtcttctgactgtgacattatcaaatagtagtaaggttacagttgtaatgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39820015 |
aaaactaaattcataatcgtttattcatttcaatttgttcatattattagtcttctgactgtgacattatcaaatagtagtaaggttacagttgtaatgg |
39819916 |
T |
|
| Q |
117 |
ctgcaaatttatatagggtggtccagaaggataggagctttggtcccaaacccttttattggggtagggataatctggcttgtatctttcctttaggtgc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39819915 |
ctgcaaatttatatagggtggtccagaaggataggagctttggtcccaaacccttttattggggtagggataatctggcttgtatctttcctttaggtgc |
39819816 |
T |
|
| Q |
217 |
tcgtaccatgtgaattccaaatgggttggccagaaaatgtttcaaatcttgagaatttttcagttgtatcttgtatgtcctcatttaaggcagattttgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39819815 |
tcgtaccatgtgaattccaaatgggttggccagaaaatgtttcaaatcttgagaatttttcagttgtatcttgtatgtgctcatttaaggcagattttgt |
39819716 |
T |
|
| Q |
317 |
acgtagcaaataagtatacatcataatattagttcctttcataaactttaggttgaacccaattggatatatgctagaaagagattgtcggtatgaataa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39819715 |
acgtagcaaataagtatacatcataatattagttcctttcataaactttaggttgaacccaattggatatatgctagaaagagattgtcggtatgaataa |
39819616 |
T |
|
| Q |
417 |
acgaatgttcgcactgctttctttcttct |
445 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39819615 |
acgaatgttcgcactgctttctttcttct |
39819587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University