View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10470_high_5 (Length: 396)
Name: NF10470_high_5
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10470_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 70 - 380
Target Start/End: Original strand, 46612936 - 46613232
Alignment:
| Q |
70 |
gtcttcgtgcttcatctctagatttacatcgacaatatccaaacatgcaagttggtccccaagcattcaattttattacacttagtgaagaaggcgtcat |
169 |
Q |
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| T |
46612936 |
gtcttcgtgcttcatctctagatttacatcgacaatatccaaacatgcaagttggtccccaagcattcaattttattacacttagtgaagaaggcgtcat |
46613035 |
T |
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| Q |
170 |
taagcactagtaaatactaaatagttaatactcaatagttgatcaatattcaactcatgttgctgttgtcaatagttaatccactagtccattccttcgt |
269 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46613036 |
caagcactagtaaata--------------ctcaatagttgataaatattcaactcatgttgatgttgtcaatagttaatccactagtccattccttcgt |
46613121 |
T |
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| Q |
270 |
aaatgtcaatcaagcataccagatagtgtgtttcagtacttgttgcaggagtttggtgtttcaatcccacttgaaaatagaatgcatcatttttatcctt |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46613122 |
aaatgtcaatcaagcataccagatagtgtgtttcagtacttgttgcaggagtttggtgtttcaatcccacttgaaaatagaatgcatcatttttatcctt |
46613221 |
T |
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