View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10470_low_12 (Length: 340)

Name: NF10470_low_12
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10470_low_12
NF10470_low_12
[»] chr3 (12 HSPs)
chr3 (1-322)||(772716-773037)
chr3 (7-58)||(40890214-40890265)
chr3 (229-275)||(10371227-10371273)
chr3 (6-150)||(27252417-27252559)
chr3 (78-150)||(37032194-37032265)
chr3 (229-275)||(44953389-44953435)
chr3 (235-275)||(7469732-7469772)
chr3 (235-275)||(29858529-29858569)
chr3 (235-275)||(39728765-39728805)
chr3 (235-275)||(42758468-42758508)
chr3 (235-275)||(48305595-48305635)
chr3 (235-275)||(48390771-48390811)
[»] chr8 (17 HSPs)
chr8 (6-150)||(6388601-6388744)
chr8 (6-156)||(29918456-29918605)
chr8 (225-275)||(17469327-17469377)
chr8 (8-60)||(29416363-29416415)
chr8 (5-150)||(36274891-36275034)
chr8 (235-275)||(4230684-4230724)
chr8 (80-150)||(30903969-30904038)
chr8 (235-275)||(34139540-34139580)
chr8 (235-278)||(32303155-32303198)
chr8 (8-61)||(5700207-5700260)
chr8 (8-97)||(28345342-28345431)
chr8 (78-150)||(39379675-39379745)
chr8 (235-275)||(2075788-2075828)
chr8 (10-58)||(8545536-8545584)
chr8 (235-275)||(24928043-24928083)
chr8 (235-275)||(27932507-27932547)
chr8 (235-275)||(29108776-29108816)
[»] chr2 (10 HSPs)
chr2 (6-150)||(25210227-25210370)
chr2 (8-149)||(13954597-13954737)
chr2 (8-149)||(14095804-14095944)
chr2 (78-150)||(13531871-13531942)
chr2 (235-275)||(13830830-13830870)
chr2 (6-156)||(30696774-30696923)
chr2 (213-275)||(6027855-6027918)
chr2 (235-275)||(7314602-7314642)
chr2 (235-275)||(30847041-30847081)
chr2 (235-275)||(36128060-36128100)
[»] chr4 (22 HSPs)
chr4 (6-150)||(42907742-42907884)
chr4 (8-150)||(25265244-25265384)
chr4 (10-150)||(21714072-21714211)
chr4 (6-150)||(36918979-36919121)
chr4 (8-150)||(8843901-8844042)
chr4 (8-150)||(8856865-8857006)
chr4 (10-156)||(7334276-7334419)
chr4 (8-150)||(21956911-21957051)
chr4 (6-150)||(12075728-12075871)
chr4 (6-112)||(37926416-37926520)
chr4 (80-149)||(39086085-39086152)
chr4 (6-150)||(33616212-33616355)
chr4 (235-275)||(44317635-44317675)
chr4 (6-43)||(16574966-16575003)
chr4 (8-57)||(30034531-30034580)
chr4 (82-150)||(35304614-35304680)
chr4 (6-38)||(3514047-3514079)
chr4 (6-148)||(9280988-9281129)
chr4 (235-275)||(26564931-26564971)
chr4 (235-275)||(31918513-31918553)
chr4 (235-275)||(43893327-43893367)
chr4 (235-275)||(47550308-47550348)
[»] chr7 (13 HSPs)
chr7 (10-150)||(31345384-31345523)
chr7 (8-147)||(11472811-11472949)
chr7 (231-275)||(30650726-30650770)
chr7 (235-275)||(3226900-3226940)
chr7 (9-97)||(6557874-6557962)
chr7 (235-275)||(7780107-7780147)
chr7 (235-275)||(10072565-10072605)
chr7 (235-275)||(16866268-16866308)
chr7 (235-275)||(17885564-17885604)
chr7 (235-275)||(18825820-18825860)
chr7 (235-275)||(21702758-21702798)
chr7 (235-275)||(38139746-38139786)
chr7 (235-275)||(44658421-44658461)
[»] chr1 (16 HSPs)
chr1 (6-150)||(13692494-13692638)
chr1 (6-150)||(39219108-39219251)
chr1 (225-275)||(49740980-49741030)
chr1 (78-150)||(5283689-5283760)
chr1 (10-145)||(8880302-8880436)
chr1 (235-275)||(20774661-20774701)
chr1 (235-275)||(23968674-23968714)
chr1 (6-61)||(25155011-25155066)
chr1 (231-269)||(5181130-5181168)
chr1 (13-148)||(36421623-36421757)
chr1 (235-275)||(12495105-12495145)
chr1 (235-275)||(16409037-16409077)
chr1 (235-275)||(16433133-16433173)
chr1 (235-275)||(19572466-19572506)
chr1 (235-275)||(34673236-34673276)
chr1 (235-275)||(51421953-51421993)
[»] scaffold1322 (1 HSPs)
scaffold1322 (6-150)||(961-1103)
[»] chr5 (8 HSPs)
chr5 (195-275)||(12447422-12447502)
chr5 (6-150)||(35583966-35584108)
chr5 (6-145)||(38972771-38972909)
chr5 (235-275)||(5908643-5908683)
chr5 (235-275)||(12834529-12834569)
chr5 (235-275)||(12866506-12866546)
chr5 (235-275)||(30996690-30996729)
chr5 (235-275)||(33727956-33727996)
[»] chr6 (12 HSPs)
chr6 (193-274)||(14506125-14506207)
chr6 (225-275)||(32959932-32959982)
chr6 (6-147)||(2126720-2126860)
chr6 (225-275)||(7393853-7393903)
chr6 (10-150)||(9402442-9402581)
chr6 (6-150)||(14321718-14321859)
chr6 (235-275)||(3483877-3483917)
chr6 (235-275)||(5863337-5863377)
chr6 (235-275)||(10188034-10188074)
chr6 (235-275)||(14255051-14255091)
chr6 (8-60)||(20348916-20348968)
chr6 (235-275)||(32053176-32053216)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 773037 - 772716
Alignment:
Q  1 tcgatagagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  773037 tcgatagagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttagattgtgtgagtgaaatgattcaa 772938  T
Q  101 ggtttgagtttctctatttatacaaaagggtaataaattgattttctacacttggg-catgagttcgggatagatt----atgggtagatatatctctgt 195  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||| | ||||| ||| | || || ||   ||     |||||||||||||| ||||    
T  772937 ggtttgagtt--tctatttatacaaaagggtaataaattgattttctatatttgggacat-atttgggcatgagttcggggtgggtagatatatccctgt 772841  T
Q  196 tacctatcccatatttgtgttttacaatcgggaaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttgtttggggggtatgaattttg 295  Q
    ||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||    
T  772840 tacctgtcccatatttgtgttttacaatc--gaaaacctaaacccagtcaaaatgaggaaaattcgtcaaattgggtttggtttgggggtatgaattttg 772743  T
Q  296 ttgtcgtgtgtaaccagacacaaaagt 322  Q
    |||||||||||||||||||||||||||    
T  772742 ttgtcgtgtgtaaccagacacaaaagt 772716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 40890214 - 40890265
Alignment:
Q  7 gagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcat 58  Q
    |||||||||| ||| ||||||||||||||||| ||||| || ||||||||||    
T  40890214 gagtgtgagagatggaaggagaaaagagagaactatgataaacgagtgtcat 40890265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 10371273 - 10371227
Alignment:
Q  229 aaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    ||||| |||||||||||||| | |||||| |||||||||||||||||    
T  10371273 aaacccaaacccagtcaaaacggggaaaacccgtcaaattgggtttg 10371227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 27252417 - 27252559
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    ||||||||||| ||| ||||||||| ||||||| || || ||| |||||||||||  |||  ||| |||  || |||||||||||||||||| | | |||    
T  27252417 agagtgtgagatatggaaggagaaa-gagagaactaagataagtgagtgtcatctgaaagactgatactctaactgtgtgagtgaaatgatttatgattt 27252515  T
Q  106 gagtttctctatttatacaaaa-gggtaataaattgattttctaca 150  Q
      |||  |||||||||| |||| ||||||||||||||  |||||||    
T  27252516 tggtt--tctatttatataaaatgggtaataaattgaaattctaca 27252559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 37032265 - 37032194
Alignment:
Q  78 attgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaa-gggtaataaattgattttctaca 150  Q
    ||||| |||||||||||||| | ||||||||||  | |||||||| |||| |||||||||||| ||||||||||    
T  37032265 attgtatgagtgaaatgatttagggtttgagtt--tttatttatataaaatgggtaataaattaattttctaca 37032194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 44953435 - 44953389
Alignment:
Q  229 aaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    ||||| |||||||||||||| | |||||| |||||||||||||||||    
T  44953435 aaacccaaacccagtcaaaacggggaaaacccgtcaaattgggtttg 44953389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 7469772 - 7469732
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  7469772 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 7469732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 29858569 - 29858529
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | ||||||||||| ||||||||||||    
T  29858569 aaacccagtcaaaacggggaaaatccgttaaattgggtttg 29858529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 39728765 - 39728805
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | ||||||||||||||||||| ||||    
T  39728765 aaacccagtcaaaacggggaaaatccgtcaaattggatttg 39728805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 42758468 - 42758508
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    ||||||||| |||| | ||||||||||||||||||||||||    
T  42758468 aaacccagttaaaacggggaaaatccgtcaaattgggtttg 42758508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 48305635 - 48305595
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||||| |||||| |||||| ||||||||||    
T  48305635 aaacccagtcaaaatggggaaaacccgtcagattgggtttg 48305595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 48390811 - 48390771
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | ||||||||||||||||||| ||||    
T  48390811 aaacccagtcaaaacggggaaaatccgtcaaattggatttg 48390771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 6388744 - 6388601
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    |||||||||| |||| |||||||||  |||||| ||||| ||| ||||||||| |  |||| |||||||  ||||||||||||||||||||| | |||||    
T  6388744 agagtgtgaggcatggaaggagaaagaagagaactatgataagtgagtgtcattttaaagtctgagactctaattgtgtgagtgaaatgatttagggttt 6388645  T
Q  106 gagtttctctatttatacaaaagggtaataaattgattttctaca 150  Q
    | |||||| | | |||| ||| |||||||||||||||||||||||    
T  6388644 gggtttctgtttatata-aaatgggtaataaattgattttctaca 6388601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 156
Target Start/End: Original strand, 29918456 - 29918605
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    ||||||| ||| ||| |||| ||||||| |||| ||||| ||   ||||||||||  |||  |||||||  || |||||||||||||||||| | |||||    
T  29918456 agagtgtaagatatggaaggcgaaaagatagaactatgataactaagtgtcatctgaaagattgagactctaactgtgtgagtgaaatgatttagggttt 29918555  T
Q  106 gagtttctctatttatacaaaag-ggtaataaattgattttctacacttggg 156  Q
    |||||  |||||||||| ||||| ||||||||||||||||| |||| |||||    
T  29918556 gagtt--tctatttatataaaagaggtaataaattgattttttacatttggg 29918605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 17469327 - 17469377
Alignment:
Q  225 gggaaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  17469327 gggaaaacccaaacccagtcaaaacggggaaaatccgtcaaattgggtttg 17469377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 29416415 - 29416363
Alignment:
Q  8 agtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatct 60  Q
    |||||||||||||||||||||||||||| || ||||| ||| |||||||||||    
T  29416415 agtgtgagacatgaaaggagaaaagagaaaactatgataagtgagtgtcatct 29416363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 36274891 - 36275034
Alignment:
Q  5 tagagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtt 104  Q
    |||||||||||| ||| ||||||||||| ||| | ||||| ||| |||||||||||  |||   |||||||  | ||||||||||||||||||  ||| |    
T  36274891 tagagtgtgagatatggaaggagaaaagggaggactatgataagtgagtgtcatctgaaagaccgagactttgactgtgtgagtgaaatgatt-tagggt 36274989  T
Q  105 tgagtttctctatttatacaaaaggg-taataaattgattttctaca 150  Q
    || |||  |||||||||| ||||||| || |||||||||||| ||||    
T  36274990 tgggtt--tctatttatataaaagggatagtaaattgattttttaca 36275034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 4230724 - 4230684
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  4230724 aaacccagtcaaaatggggaaaacccgtcaaattgggtttg 4230684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 30903969 - 30904038
Alignment:
Q  80 tgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaa-gggtaataaattgattttctaca 150  Q
    |||||||||||||||||| |||||||  |||  |||||||||| |||| | |||||||||||||||||||||    
T  30903969 tgtgtgagtgaaatgatttaaggttttggtt--tctatttatataaaatgtgtaataaattgattttctaca 30904038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 34139540 - 34139580
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  34139540 aaacccagtcaaaacgaggaaaacccgtcaaattgggtttg 34139580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 32303155 - 32303198
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttgttt 278  Q
    |||||||||||||| | |||||| ||||||||||||||||||||    
T  32303155 aaacccagtcaaaacggggaaaacccgtcaaattgggtttgttt 32303198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 5700207 - 5700260
Alignment:
Q  8 agtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatcta 61  Q
    ||||||||| ||||||||||| ||||||||| ||||| ||| || |||||||||    
T  5700207 agtgtgagatatgaaaggagataagagagaattatgataagtgactgtcatcta 5700260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 28345342 - 28345431
Alignment:
Q  8 agtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgatt 97  Q
    ||||||||| ||| ||||||| ||||||||| ||||| ||| |||||||||||  ||   |||||||   | ||||||||||||||||||    
T  28345342 agtgtgagatatggaaggagataagagagaactatgataagtgagtgtcatctgaaatactgagactatgactgtgtgagtgaaatgatt 28345431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 39379745 - 39379675
Alignment:
Q  78 attgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaagggtaataaattgattttctaca 150  Q
    ||||||| |||||||||||| ||| ||||  |||||  ||||||||| |||| |||||||||||||| |||||    
T  39379745 attgtgtaagtgaaatgatttaagatttggatttct--atttatacagaaggataataaattgatttactaca 39379675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 2075828 - 2075788
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| |  |||||||||||||||||||||||    
T  2075828 aaacccagtcaaaacggagaaaatccgtcaaattgggtttg 2075788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 8545584 - 8545536
Alignment:
Q  10 tgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcat 58  Q
    ||||||| ||| ||||||||||||||||| ||||| ||| |||||||||    
T  8545584 tgtgagatatggaaggagaaaagagagaattatgataagtgagtgtcat 8545536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 24928043 - 24928083
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  24928043 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 24928083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 27932507 - 27932547
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  27932507 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 27932547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 29108816 - 29108776
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  29108816 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 29108776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 25210227 - 25210370
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    |||||||||| ||||||||| ||||||||| || ||||| ||| ||||| |||||| || | |||||||   | |||||||||||||||||| | |||||    
T  25210227 agagtgtgagccatgaaaggtgaaaagagataactatgataagtgagtgccatctaaaattctgagactccgactgtgtgagtgaaatgatttagggttt 25210326  T
Q  106 gagtttctctatttatacaaaa-gggtaataaattgattttctaca 150  Q
    |||||  |||||||||| |||| |||||| ||||||||||||||||    
T  25210327 gagtt--tctatttatataaaatgggtaacaaattgattttctaca 25210370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 13954597 - 13954737
Alignment:
Q  8 agtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttga 107  Q
    |||| ||| ||| |||||||||||||||||| ||| | ||| |||||||||||  |||| |||||||   |  | ||||||||||||||| | |||| ||    
T  13954597 agtgcgaggcattaaaggagaaaagagagaactatcataagtgagtgtcatctgaaagtctgagactctcaccgagtgagtgaaatgatttagggttcga 13954696  T
Q  108 gtttctctatttatacaaaag-ggtaataaattgattttctac 149  Q
    |||  |||||||||| ||||| |||||||| ||||||||||||    
T  13954697 gtt--tctatttatataaaagtggtaataagttgattttctac 13954737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 14095804 - 14095944
Alignment:
Q  8 agtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttga 107  Q
    |||| ||| ||| |||||||||||||||||| ||| | ||| |||||||||||  |||| |||||||   |  | ||||||||||||||| | |||| ||    
T  14095804 agtgcgaggcattaaaggagaaaagagagaactatcataagtgagtgtcatctgaaagtctgagactctcaccgagtgagtgaaatgatttagggttcga 14095903  T
Q  108 gtttctctatttatacaaaag-ggtaataaattgattttctac 149  Q
    |||  |||||||||| ||||| |||||||| ||||||||||||    
T  14095904 gtt--tctatttatataaaagtggtaataagttgattttctac 14095944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 13531871 - 13531942
Alignment:
Q  78 attgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaa-gggtaataaattgattttctaca 150  Q
    |||||||||||||||||||| | ||||||||||  |||||||||| |||| || ||||||||||||||||||||    
T  13531871 attgtgtgagtgaaatgatttagggtttgagtt--tctatttatataaaatggataataaattgattttctaca 13531942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 13830830 - 13830870
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  13830830 aaacccagtcaaaatggggaaaacccgtcaaattgggtttg 13830870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 156
Target Start/End: Original strand, 30696774 - 30696923
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    ||||||||||| | || ||||||||| |||||| ||||  ||| || |||||| |  |||   ||||||  || ||||||||||| |||||| | |||||    
T  30696774 agagtgtgagatacgagaggagaaaatagagaactatggtaagagaatgtcatatgaaagaccgagactctaactgtgtgagtgacatgatttagggttt 30696873  T
Q  106 gagtttctctatttatacaaaa-gggtaataaattgattttctacacttggg 156  Q
    || |||||  ||||||| |||| |||||||||||||||||| |||| |||||    
T  30696874 gaatttct--atttatataaaatgggtaataaattgattttttacatttggg 30696923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 6027918 - 6027855
Alignment:
Q  213 tgttttacaatcggg-aaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    ||||||| ||||||| |||||| ||||||| |||||| | |||||| |||||||||||||||||    
T  6027918 tgttttaaaatcggggaaaacccaaacccaatcaaaacggggaaaacccgtcaaattgggtttg 6027855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 7314642 - 7314602
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||||||||||||||| |||||    
T  7314642 aaacccagtcaaaacggggaaaatccgtcaaattgagtttg 7314602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 30847041 - 30847081
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  30847041 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 30847081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 36128100 - 36128060
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | ||||||||||||||||| ||||||    
T  36128100 aaacccagtcaaaacggggaaaatccgtcaaattaggtttg 36128060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 42907742 - 42907884
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    ||||||||||| ||| |||||||||||| |||| ||||| ||| | |||||||||  |||  | |||||  || ||| |||||||||||||| | |||||    
T  42907742 agagtgtgagatatggaaggagaaaagatagaactatgataagtgtgtgtcatctgaaagactaagactctaactgtatgagtgaaatgatttagggttt 42907841  T
Q  106 gagtttctctatttatacaaaagggtaataaattgattttctaca 150  Q
    |||||  |||||||||| ||||| ||| |||||||||||||||||    
T  42907842 gagtt--tctatttatataaaagagtagtaaattgattttctaca 42907884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 25265384 - 25265244
Alignment:
Q  8 agtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttga 107  Q
    ||||||||| ||| ||||||||||||||||| ||||| |||||| ||||||||  ||   |||||||   ||||||||||| |||||||| |   |||||    
T  25265384 agtgtgagatatggaaggagaaaagagagaactatgataagcgactgtcatctgaaaaattgagactctgattgtgtgagtaaaatgatttagaatttga 25265285  T
Q  108 gtttctctatttatacaaaagggtaataaattgattttctaca 150  Q
    |||  |||||||||| | |||| ||||||||||||||||||||    
T  25265284 gtt--tctatttatatagaaggataataaattgattttctaca 25265244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 21714211 - 21714072
Alignment:
Q  10 tgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttgagt 109  Q
    ||||||| | |||| |||||||||||||| ||||| ||| ||||||||| |   ||  |||||||  |||||||| |||||||||||| | |||||||||    
T  21714211 tgtgagatacgaaaagagaaaagagagaactatgagaagtgagtgtcatttgagagactgagactctaattgtgtaagtgaaatgatttagggtttgagt 21714112  T
Q  110 ttctctatttatacaaaag-ggtaataaattgattttctaca 150  Q
    |  |||||||||| ||||| ||||||||||| ||||||||||    
T  21714111 t--tctatttatataaaagaggtaataaattaattttctaca 21714072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 36918979 - 36919121
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    |||||||||  |||| |||||||||| |||||||||||||||| |  ||||||||  |||| |||||| |  | |||||||||||||||||| |  ||||    
T  36918979 agagtgtgacgcatgtaaggagaaaaaagagaaatatgacaagtggatgtcatctgaaagtctgagac-tctactgtgtgagtgaaatgatttagagttt 36919077  T
Q  106 gagtttctctatttatacaaaag-ggtaataaattgattttctaca 150  Q
    |||||  |||||||||| ||||| ||||||||| ||||||||||||    
T  36919078 gagtt--tctatttatataaaagtggtaataaactgattttctaca 36919121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 8844042 - 8843901
Alignment:
Q  8 agtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttga 107  Q
    |||||||| |||| ||||||||||||||||| ||||| ||| |||||||||||  |||| | |||||   | |||||||||||||||||| | | ||| |    
T  8844042 agtgtgaggcatggaaggagaaaagagagaactatgataagtgagtgtcatctgaaagtctaagactgtgactgtgtgagtgaaatgatttaggatttaa 8843943  T
Q  108 gtttctctatttata-caaaagggtaataaattgattttctaca 150  Q
    |||  ||||||||||  ||| |||||||||||| ||||||||||    
T  8843942 gtt--tctatttatatgaaaggggtaataaattaattttctaca 8843901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 8857006 - 8856865
Alignment:
Q  8 agtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttga 107  Q
    |||||||| |||| ||||||||||||||||| ||||| ||| |||||||||||  |||| | |||||   | |||||||||||||||||| | | ||| |    
T  8857006 agtgtgaggcatggaaggagaaaagagagaactatgataagtgagtgtcatctgaaagtctaagactgtgactgtgtgagtgaaatgatttaggatttaa 8856907  T
Q  108 gtttctctatttata-caaaagggtaataaattgattttctaca 150  Q
    |||  ||||||||||  ||| |||||||||||| ||||||||||    
T  8856906 gtt--tctatttatatgaaaggggtaataaattaattttctaca 8856865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 7334419 - 7334276
Alignment:
Q  10 tgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttgagt 109  Q
    ||||||| ||| ||||||||||||||||| ||||| ||   | ||||| ||| |||  |||||||| || |||||||||||||||||| |  ||||||||    
T  7334419 tgtgagatatggaaggagaaaagagagaattatgataaataaatgtcaactaaaagactgagactttaactgtgtgagtgaaatgatttagagtttgagt 7334320  T
Q  110 ttctctatttatacaaaagggtaataaattgattttctacacttggg 156  Q
    |  |||||||||| |||| | |||||||||||||||| ||| |||||    
T  7334319 t--tctatttata-aaaacgataataaattgattttcaacatttggg 7334276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 21957051 - 21956911
Alignment:
Q  8 agtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttga 107  Q
    ||||||||| ||| |||||||||||| | || ||||| ||  |||||||||||| |||  ||| |||   | |||| || |||||||||| | ||||||     
T  21957051 agtgtgagatatggaaggagaaaagatataactatgataaatgagtgtcatctaaaagactgacactctgactgtgcgaatgaaatgatttagggtttgg 21956952  T
Q  108 gtttctctatttatacaaaagggtaataaattgattttctaca 150  Q
    |||| |  ||||||| |||||||||||||||||||||||||||    
T  21956951 gttttt--atttatataaaagggtaataaattgattttctaca 21956911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 12075871 - 12075728
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    ||||||||||| ||  ||||||||||||||||| ||| | ||| |  ||||||||| ||   ||| |||  || |||||| |||||||||||||  ||||    
T  12075871 agagtgtgagatatagaaggagaaaagagagaactataataagtggatgtcatctaaaaaactgaaactctaactgtgtgggtgaaatgattcagagttt 12075772  T
Q  106 gagtttctctatttatacaaaa-gggtaataaattgattttctaca 150  Q
     |||||||  ||||||| |||| |||||||||||||||||||||||    
T  12075771 tagtttct--atttatataaaatgggtaataaattgattttctaca 12075728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 37926416 - 37926520
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    ||||||||||| ||| |||||||||| |||||| ||||| ||| || |||||||   |||  |||||||| || ||||||||| |||||||| || ||||    
T  37926416 agagtgtgagatatggaaggagaaaatagagaactatgataagtgactgtcatc--aaagactgagactttaactgtgtgagttaaatgatttaaagttt 37926513  T
Q  106 gagtttc 112  Q
    |||||||    
T  37926514 gagtttc 37926520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 39086085 - 39086152
Alignment:
Q  80 tgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaagggtaataaattgattttctac 149  Q
    |||||||||||||||||| | ||||| |||||||  ||||||| |||| |||| ||||||||||||||||    
T  39086085 tgtgtgagtgaaatgatttagggtttaagtttct--atttatataaaaaggtagtaaattgattttctac 39086152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 33616355 - 33616212
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaagg-tt 104  Q
    ||||||||||| ||| | ||||||||||||||| ||||| ||| ||||||||| |  ||   | |||||   | |||||||||||||||||| | || ||    
T  33616355 agagtgtgagatatggatggagaaaagagagaactatgataagtgagtgtcatatgaaatattaagactctgactgtgtgagtgaaatgatttagggttt 33616256  T
Q  105 tgagtttctctatttatacaaaa-gggtaataaattgattttctaca 150  Q
    ||| |||   |||||||| |||| |||||||||||||||||||||||    
T  33616255 tgatttt---tatttatataaaaggggtaataaattgattttctaca 33616212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 44317635 - 44317675
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  44317635 aaacccagtcaaaacggggaaaatccgtcaaattgggtttg 44317675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 16574966 - 16575003
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatg 43  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  16574966 agagtgtgagagatgaaatgagaaaagagagaaatatg 16575003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 30034531 - 30034580
Alignment:
Q  8 agtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtca 57  Q
    ||||||||| ||| |||||||||||||| || ||||| ||||||||||||    
T  30034531 agtgtgagatatggaaggagaaaagagaaaactatgataagcgagtgtca 30034580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 35304680 - 35304614
Alignment:
Q  82 tgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaagggtaataaattgattttctaca 150  Q
    |||| ||||||||||| |  |||||||||||| |  ||||| ||||||||||||||||||||| |||||    
T  35304680 tgtgggtgaaatgatttagagtttgagtttcttt--ttatataaaagggtaataaattgatttcctaca 35304614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 3514047 - 3514079
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaa 38  Q
    |||||||||||||||||||||||| ||||||||    
T  3514047 agagtgtgagacatgaaaggagaagagagagaa 3514079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 9281129 - 9280988
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    ||||||||||| ||| ||||||||||||||| | ||||| ||| || ||| ||||  |||  |||||||  |||| ||| | || ||||||| | |||||    
T  9281129 agagtgtgagatatggaaggagaaaagagagtactatgataagtgaatgttatctgaaagattgagactctaattttgtcaatgtaatgatttagggttt 9281030  T
Q  106 gagtttctctatttatacaaaaggg-taataaattgattttcta 148  Q
    || ||  ||||| |||| ||||||| ||||||||| ||||||||    
T  9281029 gaatt--tctatctatataaaagggataataaatttattttcta 9280988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 26564931 - 26564971
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| || |||||||||||||||||| ||||    
T  26564931 aaacccagtcaaaacgaagaaaatccgtcaaattggatttg 26564971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 31918553 - 31918513
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  31918553 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 31918513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 43893327 - 43893367
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  43893327 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 43893367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 47550348 - 47550308
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||||| |||||||||| ||||||| |||||    
T  47550348 aaacccagtcaaaatggggaaaatccgccaaattgagtttg 47550308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 31345384 - 31345523
Alignment:
Q  10 tgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttgagt 109  Q
    ||||||| ||| ||| ||||||||||||| ||||| ||| |||||||||||| | |  ||||||||  |||||||||||||||||||  |  ||||||||    
T  31345384 tgtgagatatggaagaagaaaagagagaattatgataagtgagtgtcatctaaatgactgagactttgattgtgtgagtgaaatgatatagagtttgagt 31345483  T
Q  110 ttctctatttatacaaaagggtaataaattgattttctaca 150  Q
    |||| | | |||| |||| |||| |||||||||||| ||||    
T  31345484 ttctatttatata-aaaatggtagtaaattgattttttaca 31345523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 11472949 - 11472811
Alignment:
Q  8 agtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttga 107  Q
    ||||||||| ||| ||||||| ||||||||| ||||| ||| |||||||||||| |||  |||||||  || |  ||||||||||||||| | |||||      
T  11472949 agtgtgagatatggaaggagataagagagaactatgataagtgagtgtcatctaaaagactgagactctaactacgtgagtgaaatgatttagggttttg 11472850  T
Q  108 gtttctctatttatacaaaagg-gtaataaattgattttct 147  Q
    |||  |||||||||| ||||||  |||||||||||||||||    
T  11472849 gtt--tctatttatataaaaggtataataaattgattttct 11472811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 30650726 - 30650770
Alignment:
Q  231 acctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||||||| | |||||| |||||||||||||||||    
T  30650726 acctaaacccagtcaaaacggggaaaacccgtcaaattgggtttg 30650770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 3226940 - 3226900
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||| |||| |||| ||||||||||||||||||||||||||    
T  3226940 aaactcagttaaaacgaggaaaatccgtcaaattgggtttg 3226900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 6557962 - 6557874
Alignment:
Q  9 gtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgatt 97  Q
    ||||||||  || |||||||| |||||||| |  || ||| |||||||||||  |||  ||||||||  ||||||||||||||||||||    
T  6557962 gtgtgagatgtggaaggagaagagagagaacttagagaagtgagtgtcatctgaaagactgagactttgattgtgtgagtgaaatgatt 6557874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 7780107 - 7780147
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||||||||||||||| |||||    
T  7780107 aaacccagtcaaaacggggaaaatccgtcaaattgagtttg 7780147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 10072565 - 10072605
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  10072565 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 10072605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 16866268 - 16866308
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  16866268 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 16866308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 17885564 - 17885604
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  17885564 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 17885604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 18825860 - 18825820
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  18825860 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 18825820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 21702758 - 21702798
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | | ||||||||||||||||||||||    
T  21702758 aaacccagtcaaaacgggaaaaatccgtcaaattgggtttg 21702798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 38139786 - 38139746
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | ||||||||| ||||||||||||||    
T  38139786 aaacccagtcaaaacggggaaaatccatcaaattgggtttg 38139746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 44658461 - 44658421
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| |||||||| |||||||||||| ||||    
T  44658461 aaacccagtcaaaacgaggaaaacccgtcaaattggatttg 44658421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 13692494 - 13692638
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    ||||||||||| ||| ||||||||||||||||| ||| | ||| ||||||| |||  ||| || |||||  ||||||||| ||||||||||| | |||||    
T  13692494 agagtgtgagatatggaaggagaaaagagagaactataataagtgagtgtcgtctgaaagagtaagactctaattgtgtgggtgaaatgatttagggttt 13692593  T
Q  106 gagtttctctatttatacaaaaggg-taat-aaattgattttctaca 150  Q
      |||  |||||||||| ||||||| |||| ||||||||||||||||    
T  13692594 tggtt--tctatttatataaaagggataataaaattgattttctaca 13692638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 39219108 - 39219251
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    |||||||| || ||||||||||||| |||| || ||||| ||| ||||||||| |  ||   |||||||   | |||||||| ||||||||| | |||||    
T  39219108 agagtgtgcgatatgaaaggagaaaggagataactatgataagtgagtgtcatatgaaaaaatgagactgtgactgtgtgagcgaaatgatttagggttt 39219207  T
Q  106 gagtttctctatttatacaaaag-ggtaataaattgattttctaca 150  Q
    |||||  |||||||||| ||||| ||||||||||| ||||||||||    
T  39219208 gagtt--tctatttatataaaagaggtaataaattaattttctaca 39219251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 49741030 - 49740980
Alignment:
Q  225 gggaaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||||||||||||| | |||||||||||||||||| |||||    
T  49741030 gggaaaacctaaacccagtcaaaaaggggaaaatccgtcaaattgagtttg 49740980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 5283760 - 5283689
Alignment:
Q  78 attgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaaggg-taataaattgattttctaca 150  Q
    |||||||||| ||||||||| || ||||||||| ||  ||||||||||||||| | ||||||||||||||||||    
T  5283760 attgtgtgagagaaatgatttaaagtttgagttcct--atttatacaaaagggatgataaattgattttctaca 5283689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 8880302 - 8880436
Alignment:
Q  10 tgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttgagt 109  Q
    ||||||| ||| ||||||||||||||||| ||||| ||   ||||||| ||  |||  || ||||  || | |||||||||||||||| || ||||||||    
T  8880302 tgtgagatatggaaggagaaaagagagaattatgataaataagtgtcaactgaaagactgcgactctaactttgtgagtgaaatgatttaaagtttgagt 8880401  T
Q  110 ttctctatttatacaaaa-gggtaataaattgatttt 145  Q
    |  |||||||||| |||| |||||||||||| |||||    
T  8880402 t--tctatttataaaaaaggggtaataaatttatttt 8880436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 20774661 - 20774701
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  20774661 aaacccagtcaaaacggggaaaatccgtcaaattgggtttg 20774701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 23968674 - 23968714
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  23968674 aaacccaatcaaaatggggaaaatccgtcaaattgggtttg 23968714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 25155066 - 25155011
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatcta 61  Q
    |||||||||||  ||||||||||||| |||||| ||||| ||| ||||||||||||    
T  25155066 agagtgtgagatttgaaaggagaaaaaagagaactatgataagtgagtgtcatcta 25155011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 5181130 - 5181168
Alignment:
Q  231 acctaaacccagtcaaaatgaggaaaatccgtcaaattg 269  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  5181130 acctaaacccagtcaaaatggggaaaacccgtcaaattg 5181168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 36421623 - 36421757
Alignment:
Q  13 gagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttgagtttc 112  Q
    |||| ||||||||||||||||||||| ||||| ||| || || |||||  |||  |||||||   | ||||||| |||||||||| |  ||| |||||      
T  36421623 gagatatgaaaggagaaaagagagaactatgataagtgattgccatctgaaagattgagactctgactgtgtgaatgaaatgatttagagttcgagtt-- 36421720  T
Q  113 tctatttatacaaaaggg-taataaattgattttcta 148  Q
    | |||||||| || |||| ||||||||||||||||||    
T  36421721 tttatttatataagagggataataaattgattttcta 36421757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 12495105 - 12495145
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    ||||||||||||| || ||||||||||||||||||| ||||    
T  12495105 aaacccagtcaaagtggggaaaatccgtcaaattggatttg 12495145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 16409037 - 16409077
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  16409037 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 16409077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 16433173 - 16433133
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    ||||||| |||||||| |||||||||||||||||| |||||    
T  16433173 aaacccaatcaaaatggggaaaatccgtcaaattgagtttg 16433133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 19572506 - 19572466
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||||| |||||| |||||||||| ||||||    
T  19572506 aaacccagtcaaaatggggaaaacccgtcaaattaggtttg 19572466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 34673276 - 34673236
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    ||||||||| |||||| ||||||||||| ||||||||||||    
T  34673276 aaacccagttaaaatggggaaaatccgttaaattgggtttg 34673236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 51421953 - 51421993
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||||| |||||| || ||||||||||||||    
T  51421953 aaacccagtcaaaatggggaaaacccatcaaattgggtttg 51421993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 961 - 1103
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    ||||||||||| |||||||||||||| |||||| ||||| ||| || ||||||||  |||  ||||||||  |    ||||||||||||||| ||| |||    
T  961 agagtgtgagatatgaaaggagaaaa-agagaattatgataagtgattgtcatcttaaagaatgagactttgaccacgtgagtgaaatgatttaagattt 1059  T
Q  106 gagtttctctatttatacaaaa-gggtaataaattgattttctaca 150  Q
    |||||  |||||||||| |||| |||||||||||| ||||||||||    
T  1060 gagtt--tctatttatataaaatgggtaataaattaattttctaca 1103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 275
Target Start/End: Original strand, 12447422 - 12447502
Alignment:
Q  195 ttacctatcccatatttgtgttttacaatcg-ggaaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||| |||||||  ||||||||||||||  |||||||| |||||||||||||||| || |||||||||||||||||||||    
T  12447422 ttacctgtcccatacctgtgttttacaatcaaggaaaacccaaacccagtcaaaatg-gggaaatccgtcaaattgggtttg 12447502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 35583966 - 35584108
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    |||||||| || |||||||||||||| ||||||   ||| ||  ||||| |||||  |||  |||||||   | ||||||||  |||||||| | |||||    
T  35583966 agagtgtgggatatgaaaggagaaaacagagaacagtgataaatgagtgacatctgaaagactgagactctgactgtgtgagcaaaatgatttagggttt 35584065  T
Q  106 gagtttctctatttatacaaaagggtaataaattgattttctaca 150  Q
    ||||||||  ||||||| |||||||||||||||||||||| ||||    
T  35584066 gagtttct--atttatataaaagggtaataaattgattttgtaca 35584108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 38972771 - 38972909
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    ||||||||| | ||||||||||| ||||||||| ||||| ||| ||||||||| |  |||  | |||||  ||  |||||| | |||||||| | |||||    
T  38972771 agagtgtgatatatgaaaggagataagagagaactatgataagtgagtgtcatatgaaagatttagactctaacagtgtgaatcaaatgatttagggttt 38972870  T
Q  106 gagtttctctatttatacaaaaggg-taataaattgatttt 145  Q
     ||||  || ||||||| ||||||| |||||||||||||||    
T  38972871 cagtt--tcgatttatataaaagggttaataaattgatttt 38972909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 5908683 - 5908643
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    ||||||| |||||||| |||||| |||||||||||||||||    
T  5908683 aaacccaatcaaaatggggaaaacccgtcaaattgggtttg 5908643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 12834569 - 12834529
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||||| |||||| ||||||||||| |||||    
T  12834569 aaacccagtcaaaatggggaaaacccgtcaaattgagtttg 12834529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 12866546 - 12866506
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||||| |||||| |||||||||||| ||||    
T  12866546 aaacccagtcaaaatggggaaaacccgtcaaattggatttg 12866506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 30996690 - 30996729
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  30996690 aaacccagtcaaaacg-ggaaaatccgtcaaattgggtttg 30996729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 33727996 - 33727956
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  33727996 aaacccaatcaaaacggggaaaatccgtcaaattgggtttg 33727956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 14506125 - 14506207
Alignment:
Q  193 tgttacctatcccatatttgtgttttacaatcggg-aaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggttt 274  Q
    |||||||  |||||||  ||||||||  ||||||| |||||| |||||||||||||||| |||||| ||||||||||| ||||    
T  14506125 tgttacccgtcccatacctgtgttttgaaatcggggaaaacccaaacccagtcaaaatggggaaaacccgtcaaattgagttt 14506207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 32959932 - 32959982
Alignment:
Q  225 gggaaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||| ||||||    
T  32959932 gggaaaacccaaacccaatcaaaacgaggaaaatccgtcaaattaggtttg 32959982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 2126860 - 2126720
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    ||||||||||| ||| ||||||||||||||||| ||||| ||  |||||| ||||| ||    ||||||| || | ||| |||||||||||| || | ||    
T  2126860 agagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagctt 2126761  T
Q  106 gagtttctctatttatacaaaagggtaataaattgattttct 147  Q
    |||||||| | | |||| ||| |||||||||| | |||||||    
T  2126760 gagtttctatctatata-aaaggggtaataaacttattttct 2126720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 7393903 - 7393853
Alignment:
Q  225 gggaaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    ||||||| | ||||||| |||||||| ||||||||||||||||||| ||||    
T  7393903 gggaaaatccaaacccaatcaaaatggggaaaatccgtcaaattggatttg 7393853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 9402442 - 9402581
Alignment:
Q  10 tgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttgagt 109  Q
    ||||||| ||| ||||||||||||||||| ||||| ||| |||||| || |  |||    |||||   | |||||||||||||||||| | |||||| ||    
T  9402442 tgtgagatatggaaggagaaaagagagaactatgataagtgagtgtgatatgaaagacctagactctgactgtgtgagtgaaatgatttagggtttgggt 9402541  T
Q  110 ttctctatttatacaaa-agggtaataaattgattttctaca 150  Q
    |  |||||||||| |||  ||||| |||||||||||||||||    
T  9402542 t--tctatttatataaatggggtactaaattgattttctaca 9402581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 14321718 - 14321859
Alignment:
Q  6 agagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggttt 105  Q
    ||||||||||| |||||||||||||| |||||| ||||| ||| || ||||||||  |||   |||||||   |   ||||||||||||||| ||| |||    
T  14321718 agagtgtgagatatgaaaggagaaaa-agagaattatgataagtgattgtcatcttaaagaacgagactttg-tcacgtgagtgaaatgatttaagattt 14321815  T
Q  106 gagtttctctatttatacaaaa-gggtaataaattgattttctaca 150  Q
    |||||  |||||||||| ||||  ||||||||||| ||||||||||    
T  14321816 gagtt--tctatttatataaaataggtaataaattaattttctaca 14321859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 3483917 - 3483877
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  3483917 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 3483877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 5863377 - 5863337
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  5863377 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 5863337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 10188074 - 10188034
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  10188074 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 10188034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 14255051 - 14255091
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| |||||||||| |||||| ||||||||    
T  14255051 aaacccagtcaaaacgaggaaaatctgtcaaaatgggtttg 14255091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 20348916 - 20348968
Alignment:
Q  8 agtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatct 60  Q
    ||||||||| ||| ||||||||||||||||| ||||| |||  ||||||||||    
T  20348916 agtgtgagatatggaaggagaaaagagagaactatgataagtaagtgtcatct 20348968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 32053176 - 32053216
Alignment:
Q  235 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 275  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  32053176 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 32053216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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