View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10470_low_13 (Length: 332)
Name: NF10470_low_13
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10470_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 30381669 - 30381975
Alignment:
| Q |
17 |
aggaaattcatataggattttgcttggggacattaaagatctttttaagatggaaaaagaagccaaatcaaaatccatgaatctctccgatgatataaca |
116 |
Q |
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| T |
30381669 |
aggaaattcatataggattttgcttggggacataaaagatctttttaagatggaaaaagaagccaaatcaaaatccatgaatctctccgatgatataaca |
30381768 |
T |
|
| Q |
117 |
ccacgtgtaattccctacatccaacatagtgttaaaattcatggtatgtttgttctttgctcaaccttaatcctaagtgccataacatgccatctttcta |
216 |
Q |
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| T |
30381769 |
ccacgtgtaattccctacatccaacatagtgttaaaattcatggtatgtttgttctttgctcaaccttaatcctaagtgcaataacatgccatctttcta |
30381868 |
T |
|
| Q |
217 |
atgtcacataattttaaataggttcatactttttgtttgtgctgtaaatatcttcctaacccttatc-nnnnnnnnagtaatctttctcgacattcttag |
315 |
Q |
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| T |
30381869 |
atgtcacataattttaaataggttcataatttttgtttgtgctgtaaatatcttcctaacccttatctttttttatagtaatctttctcgacattcttag |
30381968 |
T |
|
| Q |
316 |
acctatg |
322 |
Q |
| |
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|| |||| |
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| T |
30381969 |
acttatg |
30381975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 30391182 - 30391288
Alignment:
| Q |
59 |
ttttaagatggaaaaagaagccaaatcaaaatccatgaatctctccgatgatataacaccacgtgtaattccctacatccaacatagtgttaaaattcat |
158 |
Q |
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| T |
30391182 |
ttttaacatggaaaaggaagccaaatccaaatctatgaacctctccgatgatatcacgccacgtgtcattccctactacaatgaaagtgttagaattcat |
30391281 |
T |
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| Q |
159 |
ggtatgt |
165 |
Q |
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||||||| |
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| T |
30391282 |
ggtatgt |
30391288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 41631795 - 41631658
Alignment:
| Q |
25 |
catataggattttgcttggggacattaaagatctttttaagatggaaaaagaagccaaatcaaaatccatgaatctctccgatgatataacaccacgtgt |
124 |
Q |
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|||||||||||||| ||| ||||| || |||||| ||||||||||||| ||||| | || ||||||||||||||| |||||||||||| |||||||| |
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| T |
41631795 |
catataggattttgtatggagacataaaggatcttcttaagatggaaaaggaagctaggtctaaatccatgaatctcaccgatgatataatgccacgtgt |
41631696 |
T |
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| Q |
125 |
aattccctacatccaacatagtgttaaaattcatggta |
162 |
Q |
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| T |
41631695 |
aattccctacatccaacacaatgttaaaattcatggta |
41631658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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