View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10470_low_14 (Length: 327)
Name: NF10470_low_14
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10470_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 152 - 309
Target Start/End: Original strand, 43330392 - 43330549
Alignment:
| Q |
152 |
tgagcaaccataaagatgatgaagatggaaatagactaaaatatgaaaagatgattcgattaaaatctagaatgagatgaaggtatagagtgacttcaaa |
251 |
Q |
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| T |
43330392 |
tgagcaaccataaagatgatgaagatggaaatagactaaaatatgaaaagatgattcgattaaaatctagaatgagatgaaggtatagagtgacttcaaa |
43330491 |
T |
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| Q |
252 |
aattctagattttataatctatgataaaatctgtttttcgaaatggacatacccatat |
309 |
Q |
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| T |
43330492 |
aattctagattttataatctatgataaaatctgtttttcgaaatggacatacccatat |
43330549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 43330107 - 43330238
Alignment:
| Q |
1 |
gataaagtgactttgaaagttatggattttaattttggatctataatgaaatttgggttttggtgctccacatatatacggaaccatttgtatttgtc-- |
98 |
Q |
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| T |
43330107 |
gataaagtgactttgaaagttatggattttaattttggatctataatgaaatttgggttttggtgctccacatatatacggaaccatttgtatttgtcct |
43330206 |
T |
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| Q |
99 |
ctctttgttttctatctgcgagtaatacagtg |
130 |
Q |
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| T |
43330207 |
ctctttgttttctatccgcgagtaatacagtg |
43330238 |
T |
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