View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10470_low_21 (Length: 279)
Name: NF10470_low_21
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10470_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 40573331 - 40573091
Alignment:
| Q |
19 |
cagaacaatcgcatgtagcatatatatgtcttgtgttttgcaatagcttcttttttctccttatttgaggatcgttaggaattttgatttcatggaatgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40573331 |
cagaacaatcgcatgtagcatatatatgtcttgtcttttgctatagcttcttttttctccttatttgaggatcgttaggaattttgatttcatggaatgt |
40573232 |
T |
|
| Q |
119 |
ttccctatgttaaattatgatttagaaccaactaatacaccttatgatcatttgctattcatctttagcaaaaatattaatataggtatctcaattctaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40573231 |
ttccctatgttaaattatgatttagaaccaactaatacaccttatgatcatttgctattcatctttag--aaaatattaatataggtatctcaattctaa |
40573134 |
T |
|
| Q |
219 |
cattttaaagataatttgattgtgttatatatgtatcttgttta |
262 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40573133 |
cattttaaagataa-ttgattgtgttatatatgtatcttgttta |
40573091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University