View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10470_low_22 (Length: 256)
Name: NF10470_low_22
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10470_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 30112182 - 30112418
Alignment:
| Q |
1 |
atttggcaggcaattagatatatttccatgctttgcccaatctcttttcttatttatttttgttgtcttgcaacataaatgtaaatcacataggatgaag |
100 |
Q |
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| T |
30112182 |
atttggcaggcaattagatatatttccatgctttgcccaatctcttttcttatttatttt-gttgtcttgcaacataaatgtaaatcacataggatgaag |
30112280 |
T |
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| Q |
101 |
ctgacctcaccttaagttgcagggtacatacacactcgacagtcgataaaaatatacaaaaattcatcatatgcttcatacattatctgatggtgacaat |
200 |
Q |
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| T |
30112281 |
ctgacctcaccttaagttgcagggtacatacacactcgacagtcgataaaaatatacaaaaat---tcatatgcttcatacattatctgatggtgacaat |
30112377 |
T |
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| Q |
201 |
agggattggtctcattaccactagcattaattatgcatgtt |
241 |
Q |
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| T |
30112378 |
agggattggtctcattaccactagcattaattatgcatgtt |
30112418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 30152835 - 30153071
Alignment:
| Q |
1 |
atttggcaggcaattagatatatttccatgctttgcccaatctcttttcttatttatttttgttgtcttgcaacataaatgtaaatcacataggatgaag |
100 |
Q |
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| T |
30152835 |
atttggcaggcaattagatatatttccatgctttgcccaatctcttttcttatttatttt-gttgtcttgcaacataaatgtaaatcacataggatgaag |
30152933 |
T |
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| Q |
101 |
ctgacctcaccttaagttgcagggtacatacacactcgacagtcgataaaaatatacaaaaattcatcatatgcttcatacattatctgatggtgacaat |
200 |
Q |
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| T |
30152934 |
ctgacctcaccttaagttgcagggtacatacacactcgacagtcgataaaaatatacaaaaat---tcatatgcttcatacattatctgatggtgacaat |
30153030 |
T |
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| Q |
201 |
agggattggtctcattaccactagcattaattatgcatgtt |
241 |
Q |
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| T |
30153031 |
agggattggtctcattaccactagcattaattatgcatgtt |
30153071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 30150158 - 30150249
Alignment:
| Q |
18 |
atatatttccatgctttgcccaatctcttttcttatttatttttgttgtcttgcaacataaatgtaaatcacataggatgaagctgacctcac |
110 |
Q |
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| T |
30150158 |
atatatttccatgctttgcccaatctcttttcttatttatttt-gttgtcttgcaacataaatgtaaatcacataggatgaagctgacctcac |
30150249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 30150427 - 30150479
Alignment:
| Q |
189 |
gatggtgacaatagggattggtctcattaccactagcattaattatgcatgtt |
241 |
Q |
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| T |
30150427 |
gatggtgacaatagggattggtctcattaccacaagcattaattatgcatgtt |
30150479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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