View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10470_low_24 (Length: 254)

Name: NF10470_low_24
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10470_low_24
NF10470_low_24
[»] chr1 (9 HSPs)
chr1 (1-237)||(36754806-36755042)
chr1 (73-185)||(20816895-20817006)
chr1 (69-166)||(17048058-17048155)
chr1 (72-156)||(34488588-34488672)
chr1 (69-163)||(11833671-11833765)
chr1 (73-187)||(22669024-22669138)
chr1 (88-139)||(10751556-10751607)
chr1 (88-182)||(1634920-1635014)
chr1 (58-110)||(13258054-13258106)
[»] chr8 (15 HSPs)
chr8 (69-231)||(19342158-19342320)
chr8 (69-231)||(19371656-19371818)
chr8 (81-187)||(12843488-12843594)
chr8 (69-183)||(22881699-22881813)
chr8 (71-162)||(25809562-25809653)
chr8 (112-222)||(10650312-10650422)
chr8 (69-171)||(20707146-20707248)
chr8 (72-163)||(28458049-28458138)
chr8 (88-139)||(24502368-24502419)
chr8 (100-177)||(17872012-17872089)
chr8 (72-145)||(15610249-15610322)
chr8 (69-189)||(5346072-5346191)
chr8 (73-129)||(10516419-10516475)
chr8 (81-145)||(15748418-15748482)
chr8 (69-141)||(15753132-15753204)
[»] chr3 (7 HSPs)
chr3 (23-227)||(23528299-23528503)
chr3 (73-177)||(4596840-4596944)
chr3 (88-171)||(9796540-9796623)
chr3 (66-139)||(9828934-9829006)
chr3 (77-145)||(2906526-2906594)
chr3 (69-177)||(4698583-4698691)
chr3 (95-171)||(17034132-17034208)
[»] chr2 (13 HSPs)
chr2 (27-218)||(16748014-16748203)
chr2 (69-183)||(24386337-24386451)
chr2 (88-183)||(27483804-27483899)
chr2 (90-187)||(21538453-21538550)
chr2 (94-192)||(12061203-12061302)
chr2 (69-139)||(13896937-13897006)
chr2 (69-139)||(14037554-14037623)
chr2 (73-163)||(18115082-18115172)
chr2 (101-187)||(22108280-22108366)
chr2 (72-158)||(35511828-35511914)
chr2 (149-182)||(24109118-24109151)
chr2 (84-177)||(31851192-31851285)
chr2 (95-171)||(22311211-22311287)
[»] chr7 (16 HSPs)
chr7 (69-219)||(11739526-11739676)
chr7 (74-186)||(39199758-39199872)
chr7 (80-197)||(23662258-23662375)
chr7 (77-144)||(3316119-3316186)
chr7 (72-187)||(6414881-6414996)
chr7 (77-187)||(23183444-23183554)
chr7 (77-142)||(7681513-7681578)
chr7 (80-197)||(23655457-23655574)
chr7 (77-142)||(7666254-7666319)
chr7 (104-161)||(19650724-19650781)
chr7 (69-189)||(7144564-7144683)
chr7 (80-187)||(32561883-32561988)
chr7 (69-163)||(1675008-1675102)
chr7 (95-173)||(1783369-1783447)
chr7 (84-165)||(4122590-4122671)
chr7 (69-158)||(39227386-39227475)
[»] chr4 (11 HSPs)
chr4 (72-227)||(35150106-35150261)
chr4 (69-177)||(24715650-24715758)
chr4 (69-159)||(12285764-12285854)
chr4 (81-198)||(9736410-9736527)
chr4 (102-177)||(9883032-9883107)
chr4 (103-222)||(19601508-19601627)
chr4 (69-140)||(20748672-20748743)
chr4 (77-163)||(7221262-7221347)
chr4 (116-187)||(23692967-23693038)
chr4 (77-118)||(16300692-16300733)
chr4 (77-109)||(7224279-7224311)
[»] chr5 (7 HSPs)
chr5 (66-132)||(24558953-24559019)
chr5 (66-132)||(24599985-24600051)
chr5 (69-159)||(11848263-11848353)
chr5 (103-189)||(18807449-18807535)
chr5 (119-220)||(17771693-17771794)
chr5 (118-187)||(16687129-16687198)
chr5 (81-125)||(16686436-16686480)
[»] chr6 (3 HSPs)
chr6 (69-163)||(14761285-14761378)
chr6 (102-219)||(12869801-12869918)
chr6 (149-222)||(33546579-33546652)
[»] scaffold0466 (1 HSPs)
scaffold0466 (69-177)||(4317-4425)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 36754806 - 36755042
Alignment:
Q  1 ctagacaacatttagcaacttttttaaaatacataagtttgtaaccatcgaaaaggaggagattttttaaccaaagtgggttttagaacaatatctctaa 100  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  36754806 ctagacaacattcatcaacttttttaaaatacataagtttgtaaccatcgaaaagggggggattttttaaccaaagtgggttttagaacaatatctctaa 36754905  T
Q  101 agttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgactctgaattcaactt 200  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36754906 agttttgatgataacaatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgactctgaattcaactt 36755005  T
Q  201 gttggttctaaaacaccaagctttgaatgcatttggt 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  36755006 gttggttctaaaacaccaagctttgaatgcatttggt 36755042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 20816895 - 20817006
Alignment:
Q  73 aaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataa 172  Q
    |||||||||||||||||||| ||||||| ||||| ||| ||| |||||||||||||||||||| ||||| ||| | ||||| |||||||||||| |||||    
T  20816895 aaagtgggttttagaacaatgtctctaatgttttaatgataacaatgtatgaaagaacaattgaatact-taatgtgtgttgaagtgtgcaggaccataa 20816993  T
Q  173 aattatattctga 185  Q
    ||||| |||||||    
T  20816994 aattaaattctga 20817006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 17048058 - 17048155
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcagga 166  Q
    |||||||||| ||||||||||||||| ||||| |||||| || ||| ||||||||||| |||||||||||| | ||| | ||||||||||||||||||    
T  17048058 aaccaaagtgagttttagaacaatatatctaaggttttgttgataaaaatgtatgaaataacaattggatattttaatgtgtgttcaagtgtgcagga 17048155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 34488672 - 34488588
Alignment:
Q  72 caaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaa 156  Q
    ||||||||||||||||||||| | |||| |||||||||| |||||| |||||||||||||||| |||||||||| | ||||||||    
T  34488672 caaagtgggttttagaacaatgtatctagagttttgatgataataaggtatgaaagaacaatttgatactctaatgtgtgttcaa 34488588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 11833765 - 11833671
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgca 163  Q
    |||||||||| |||||| |||||| ||||||||||||| ||| |||||| |||||||| || |||| || ||||||| | |||||||| ||||||    
T  11833765 aaccaaagtgagttttaaaacaatgtctctaaagttttaatgataataacgtatgaaaaaataatttgaaactctaatgtgtgttcaattgtgca 11833671  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 22669024 - 22669138
Alignment:
Q  73 aaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataa 172  Q
    |||||||||||||||| ||| | |  || ||||| ||| ||| |||||||||||||| |||| | ||||||||    ||||||||||||||||| ||||     
T  22669024 aaagtgggttttagaataatgttttcaaggtttttatgataacaatgtatgaaagaagaatttggtactctaatatttgttcaagtgtgcaggaccatat 22669123  T
Q  173 aattatattctgact 187  Q
    ||||| ||| |||||    
T  22669124 aattaaattttgact 22669138  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 10751607 - 10751556
Alignment:
Q  88 acaatatctctaaagttttgatggtaataatgtatgaaagaacaattggata 139  Q
    ||||| ||||||||||||||||| ||| || |||| ||||||||||||||||    
T  10751607 acaatgtctctaaagttttgatgataacaaagtattaaagaacaattggata 10751556  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 1634920 - 1635014
Alignment:
Q  88 acaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattc 182  Q
    ||||| |||| | |||||||||| |||||| |||| |  |||||||||||||  ||||   |||||||||||||||||| |||| ||||| ||||    
T  1634920 acaatgtctccagagttttgatgataataaggtataagtgaacaattggataggctaatatgtgttcaagtgtgcaggagcatagaattaaattc 1635014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 13258054 - 13258106
Alignment:
Q  58 ggagattttttaaccaaagtgggttttagaacaatatctctaaagttttgatg 110  Q
    ||||||| || |||||||||||  ||||||||||| |||||| ||||||||||    
T  13258054 ggagattgttgaaccaaagtggactttagaacaatgtctctagagttttgatg 13258106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 19342158 - 19342320
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatc 168  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| | || | |||||||||||||||| | |    
T  19342158 aaccaaagtgagttttagaacaatgtctctaaagttttgatgataacaatgtatgaaagaacaattggatacacaaatgtgtgttcaagtgtgcagtacc 19342257  T
Q  169 ataaaattatattctgactctgaattcaacttgttggttctaaaacaccaagctttgaatgca 231  Q
    ||||||||| ||||| |||||||| |||||||||||||||| ||| |||||  ||||||||||    
T  19342258 ataaaattaaattctaactctgaagtcaacttgttggttctgaaataccaaaatttgaatgca 19342320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 19371656 - 19371818
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatc 168  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| | || | |||||||||||||||| | |    
T  19371656 aaccaaagtgagttttagaacaatgtctctaaagttttgatgataacaatgtatgaaagaacaattggatacacaaatgtgtgttcaagtgtgcagtacc 19371755  T
Q  169 ataaaattatattctgactctgaattcaacttgttggttctaaaacaccaagctttgaatgca 231  Q
    | ||||||| ||||| |||||||| ||||| |||||||| | |||||||||  ||||||||||    
T  19371756 acaaaattaaattctaactctgaagtcaacctgttggttatgaaacaccaaaatttgaatgca 19371818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 12843594 - 12843488
Alignment:
Q  81 ttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatat 180  Q
    |||||||||| | |||||| |||||||||| |||||||||||||||||| |||||||||| |||| | |||||||||||||||||| |||| ||||| ||    
T  12843594 ttttagaacagtgtctctagagttttgatgataataatgtatgaaagaataattggatacgctaatgtgtgttcaagtgtgcaggaccatataattaaat 12843495  T
Q  181 tctgact 187  Q
    |||||||    
T  12843494 tctgact 12843488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 22881813 - 22881699
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatc 168  Q
    |||||||||| ||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||||||| | |||||| |||||| | || |    
T  22881813 aaccaaagtgagttttagaacaatgtctctaaggttttgatgataataatatatgaaagaacaattggatactctaatgtgtgttctagtgtgtatgacc 22881714  T
Q  169 ataaaattatattct 183  Q
    ||| ||||| |||||    
T  22881713 atataattaaattct 22881699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 25809653 - 25809562
Alignment:
Q  71 ccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgc 162  Q
    |||||||||||||||||||||| ||| ||  ||||||||| ||| || |||| |||||| ||||||||||||||| | |||||| |||||||    
T  25809653 ccaaagtgggttttagaacaatgtctatatggttttgatgttaacaaagtataaaagaataattggatactctaatgtgtgttcgagtgtgc 25809562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 10650422 - 10650312
Alignment:
Q  112 taataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgactctgaattcaacttgttggttctaa 211  Q
    |||||||  |||||||||| ||||||| |||||| | |||||||  ||||| | | |||||||||| ||| ||||| |||| |||||||||||||| | |    
T  10650422 taataatcaatgaaagaacgattggatgctctaatgtgtgttcatatgtgccgaaccataaaattaaattatgactttgaagtcaacttgttggttttga 10650323  T
Q  212 aacaccaagct 222  Q
    |||||||||||    
T  10650322 aacaccaagct 10650312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 20707248 - 20707146
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatc 168  Q
    |||||||||| |||||| |||||| ||| ||| ||||  ||| ||| ||||| ||||||||||||| |||||||||| | ||||||||||||| |||| |    
T  20707248 aaccaaagtgagttttaaaacaatgtctataaggtttaaatgataacaatgtttgaaagaacaattagatactctaatgtgtgttcaagtgtgtaggacc 20707149  T
Q  169 ata 171  Q
    |||    
T  20707148 ata 20707146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 28458049 - 28458138
Alignment:
Q  72 caaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgca 163  Q
    |||||||| ||||||||||||| || ||| | ||||||||||| ||||| |||||||| |||||  |||||||| | ||||| |||||||||    
T  28458049 caaagtggattttagaacaatacctataagggtttgatggtaacaatgtgtgaaagaataattg--tactctaatgtgtgtttaagtgtgca 28458138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 24502368 - 24502419
Alignment:
Q  88 acaatatctctaaagttttgatggtaataatgtatgaaagaacaattggata 139  Q
    |||||| |||||||||||||||| |||||| |||| ||||||||||||||||    
T  24502368 acaatacctctaaagttttgatgataataaagtattaaagaacaattggata 24502419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 17872012 - 17872089
Alignment:
Q  100 aagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaatta 177  Q
    ||||||||||| ||| ||||||| ||||||||||| ||||  ||||   |||||||||| |||||||||||| |||||    
T  17872012 aagttttgatgataacaatgtataaaagaacaatttgatatgctaatttgtgttcaagtatgcaggatcatagaatta 17872089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 15610322 - 15610249
Alignment:
Q  72 caaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaa 145  Q
    ||||||||||||||||||||| ||| ||| ||||||||  ||| ||||| || |||||||| | | ||||||||    
T  15610322 caaagtgggttttagaacaatgtctataaggttttgataataaaaatgtgtgtaagaacaacttgttactctaa 15610249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 5346191 - 5346072
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatc 168  Q
    ||||||| || ||||| ||||||||||||  |||| |||||  ||  ||||||| || || ||||||||||  |||||| |||||||||| |||   | |    
T  5346191 aaccaaaatgagtttt-gaacaatatctcggaagtcttgattatatcaatgtataaaggagcaattggatatgctaacgtgtgttcaagtatgcgtaacc 5346093  T
Q  169 ataaaattatattctgactct 189  Q
    ||||||||| |||||||||||    
T  5346092 ataaaattaaattctgactct 5346072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 10516419 - 10516475
Alignment:
Q  73 aaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaa 129  Q
    |||||||||||||||||||| | | |||  |||||||| ||| ||||||||||||||    
T  10516419 aaagtgggttttagaacaatgtttataagattttgatgataacaatgtatgaaagaa 10516475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 15748482 - 15748418
Alignment:
Q  81 ttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaa 145  Q
    |||||||||||  |||||||  |||| ||| ||| ||||||||||||||||||||  ||||||||    
T  15748482 ttttagaacaaagtctctaagatttttatgataacaatgtatgaaagaacaattgcctactctaa 15748418  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 15753204 - 15753132
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatact 141  Q
    ||||||| ||| |||||||||||  |||||||  |||| ||| ||| |||||||| |||||||||||| ||||    
T  15753204 aaccaaattggattttagaacaaagtctctaagatttttatgataacaatgtatgtaagaacaattgggtact 15753132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 23528299 - 23528503
Alignment:
Q  23 tttaaaatacataagtttgtaaccatcgaaaa-ggaggagattttttaaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgta 121  Q
    ||||| |||||||||||| | | |||| |||| ||| |||||| || |||||||||| ||||||||||||| ||||||| ||||||||| ||| |||||     
T  23528299 tttaagatacataagtttctcatcatcaaaaaaggaagagattgttgaaccaaagtgagttttagaacaatgtctctaaggttttgatgataacaatgtc 23528398  T
Q  122 tgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgactctgaattcaacttgttggttctaaaacaccaagc 221  Q
    ||||||||||||||| |||| |||    || |||| ||||||||| |||||||||| ||| ||| |||||| |||||||||||||| | | |||||||||    
T  23528399 tgaaagaacaattgggtactataatttttgctcaa-tgtgcaggaccataaaattaaattttgaatctgaaatcaacttgttggttttgatacaccaagc 23528497  T
Q  222 tttgaa 227  Q
    | ||||    
T  23528498 tctgaa 23528503  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 4596840 - 4596944
Alignment:
Q  73 aaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataa 172  Q
    |||||||||||||||| ||| ||| ||||||||  ||| | ||||| ||| |||||| | ||||||||||||| | ||||||| |||||||  | |||||    
T  4596840 aaagtgggttttagaataatgtctttaaagtttaaatgatgataatatataaaagaatatttggatactctaatgtgtgttcaggtgtgcaaaaccataa 4596939  T
Q  173 aatta 177  Q
    |||||    
T  4596940 aatta 4596944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 9796623 - 9796540
Alignment:
Q  88 acaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcata 171  Q
    ||||| ||||| ||||||||||| |||||| |||| ||||||||||||||||   |||    ||||||||||||||||||||||    
T  9796623 acaatttctctgaagttttgatgataataaagtattaaagaacaattggatatgttaatatatgttcaagtgtgcaggatcata 9796540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 9828934 - 9829006
Alignment:
Q  66 tttaaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggata 139  Q
    |||||||||| || ||||| ||||||| || |||||||||||||| ||| ||||||| ||||||||||| ||||    
T  9828934 tttaaccaaaatgagtttt-gaacaatgtccctaaagttttgatgataacaatgtataaaagaacaattagata 9829006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 2906594 - 2906526
Alignment:
Q  77 tgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaa 145  Q
    |||| |||| || ||| ||||||||||||||||| ||| |||||||  ||||| |||||||||||||||    
T  2906594 tgggatttacaataatgtctctaaagttttgatgataacaatgtatagaagaataattggatactctaa 2906526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 4698583 - 4698691
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatc 168  Q
    |||||| |||| |||||||| ||| ||| |||||| || ||| ||  | ||| | |||||||||||| ||||||||| |  ||||||||||||||  | |    
T  4698583 aaccaaggtggattttagaataatgtctttaaagtattaatgatagcattgtgtaaaagaacaattgaatactctaatgtatgttcaagtgtgcaaaacc 4698682  T
Q  169 ataaaatta 177  Q
    |||||||||    
T  4698683 ataaaatta 4698691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 17034132 - 17034208
Alignment:
Q  95 ctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcata 171  Q
    |||| ||||||||||| ||| |||||||  |||||||||||||||   |||  | |||||||||||||| |||||||    
T  17034132 ctctgaagttttgatgataacaatgtattgaagaacaattggatatgttaatacatgttcaagtgtgcacgatcata 17034208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 16748014 - 16748203
Alignment:
Q  27 aaatacataagtttgtaaccatcgaaaaggaggagattttttaaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaa 126  Q
    |||| ||||||||||| | |||  |||||||||| |||  | ||||||| |||||||||||||||| | |||||  |||||||| |||||||||||||||    
T  16748014 aaatccataagtttgttatcataaaaaaggaggaaattgatgaaccaaa-tgggttttagaacaatgtttctaagattttgatgataataatgtatgaaa 16748112  T
Q  127 gaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgactctgaattcaacttgttggttctaaaacacca 218  Q
    ||||| ||| ||||||||| | |||||||| |||| || | |||||||| | ||| ||||| |||| |||| || |||||||| ||||||||    
T  16748113 gaacagttgaatactctaatgtgtgttcaaatgtgtagaaccataaaatcaaattttgact-tgaaatcaatttattggttctgaaacacca 16748203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 24386451 - 24386337
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatc 168  Q
    ||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||||   || | ||| | ||||||||||||||| || |    
T  24386451 aaccaaagtgggttttagaacaatatccctaaggtttttatgataataatgtatgaaagaacaatttagtaatttaatgtgtgttcaagtgtgcatgacc 24386352  T
Q  169 ataaaattatattct 183  Q
    ||| ||||| |||||    
T  24386351 atagaattaaattct 24386337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 27483804 - 27483899
Alignment:
Q  88 acaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattct 183  Q
    ||||| ||||| ||||||||||  ||| || || ||||||||||||| ||||   ||| | |||||||||||||||||| |||||||||| |||||    
T  27483804 acaatgtctctgaagttttgatcataacaaagtttgaaagaacaatttgatatattaatgtgtgttcaagtgtgcaggaccataaaattaaattct 27483899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 21538453 - 21538550
Alignment:
Q  90 aatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgact 187  Q
    ||||||| | ||||||||||| ||| ||||||||||||||||||| | |||||||  | |||||||| || | | || |||| ||||| |||||||||    
T  21538453 aatatcttttaagttttgatgataacaatgtatgaaagaacaatttggtactctattgtgtgttcaattgggaaagaccatataattaaattctgact 21538550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 12061302 - 12061203
Alignment:
Q  94 tctctaaagttttgatggtaataatgtatgaaa-gaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgactctgaa 192  Q
    ||||| ||||||||||| |||||| |||||||| |||||||| ||||   ||| | | ||| |||||||||| |||||||| |||  |||||||||||||    
T  12061302 tctctgaagttttgatgataataaagtatgaaaagaacaattagatatgttaatgtgagtttaagtgtgcagaatcataaacttaatttctgactctgaa 12061203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 13897006 - 13896937
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggata 139  Q
    ||||||| ||||||||| |||||| ||||| ||||||||||| ||| || || |||||||| |||||||||    
T  13897006 aaccaaaatgggtttta-aacaatgtctcttaagttttgatgataacaaagtttgaaagaaaaattggata 13896937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 14037623 - 14037554
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggata 139  Q
    ||||||| ||||||||| |||||| ||||| ||||||||||| ||| || || |||||||| |||||||||    
T  14037623 aaccaaaatgggtttta-aacaatgtctcttaagttttgatgataacaaagtttgaaagaaaaattggata 14037554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 18115172 - 18115082
Alignment:
Q  73 aaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgca 163  Q
    |||||||| ||||  ||||| | ||||| ||||||||| ||| || |||| |||||| |||||| |||||||| | ||| |||||||||||    
T  18115172 aaagtggggtttaacacaatttttctaaggttttgatgataacaacgtataaaagaataattgggtactctaatgtgtgctcaagtgtgca 18115082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 22108280 - 22108366
Alignment:
Q  101 agttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgact 187  Q
    |||||||||| ||||||| | ||||||| |||||  ||| | ||| | ||||||||||||||| ||||||| ||||| | |||||||    
T  22108280 agttttgatgataataatatgtgaaagagcaattttatattataatgtgtgttcaagtgtgcatgatcatataattaaaatctgact 22108366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 35511828 - 35511914
Alignment:
Q  72 caaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagt 158  Q
    ||||||| ||||||||||||| | | ||| ||||||||| |||  |||||| |||||| |||| |||||||||| |  |||||||||    
T  35511828 caaagtgagttttagaacaatgtttttaatgttttgatgataacgatgtataaaagaataatttgatactctaatgtatgttcaagt 35511914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 24109118 - 24109151
Alignment:
Q  149 gtgttcaagtgtgcaggatcataaaattatattc 182  Q
    ||||||||||||||||||||||||||||| ||||    
T  24109118 gtgttcaagtgtgcaggatcataaaattaaattc 24109151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 31851192 - 31851285
Alignment:
Q  84 tagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaatta 177  Q
    ||||||||||| ||||| |||||| ||  || | |||||  |||||||||| |||| ||||| |  |||||||||||||| ||||||| |||||    
T  31851192 tagaacaatatttctaaggttttggtgacaacagtgtatagaagaacaattagatattctaaagtttgttcaagtgtgcatgatcatataatta 31851285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 22311211 - 22311287
Alignment:
Q  95 ctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcata 171  Q
    |||||| ||||||||| ||| || ||||  |||||||||||||||  ||||    ||||||||||||||||||||||    
T  22311211 ctctaaggttttgatgataacaaagtattgaagaacaattggatatactaatatttgttcaagtgtgcaggatcata 22311287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 11739526 - 11739676
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatc 168  Q
    |||||||  ||||||||||||||| | ||||| ||||||||| ||| ||  ||||||||||||||| | |||||||||  || |||||| |||||| | |    
T  11739526 aaccaaaaagggttttagaacaatgtttctaatgttttgatgataacaacatatgaaagaacaattaggtactctaacatgtattcaagcgtgcagtacc 11739625  T
Q  169 ataaaattatattctgactctgaattcaacttgttggttctaaaacaccaa 219  Q
    ||| ||||| |||||||||| ||| || ||||||||||||| |||||||||    
T  11739626 atagaattaaattctgactcagaagtctacttgttggttctgaaacaccaa 11739676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 39199758 - 39199872
Alignment:
Q  74 aagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaa--cgcgtgttcaagtgtgcaggatcata 171  Q
    ||||| ||||||||| ||||||||||| ||||||||  ||| |||||||||| |||||||| ||||||||||   ||||||| |||| |||| || ||||    
T  39199758 aagtgagttttagaataatatctctaaggttttgataataacaatgtatgaatgaacaatttgatactctaatgtgcgtgtttaagtatgcatgaccata 39199857  T
Q  172 aaattatattctgac 186  Q
     ||||| ||||||||    
T  39199858 taattaaattctgac 39199872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 23662375 - 23662258
Alignment:
Q  80 gttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattata 179  Q
    ||||||||| ||| ||||||| ||||||||| | | ||||||| ||||||||||||||||| ||||    ||||  ||| ||||||| |||| ||||| |    
T  23662375 gttttagaataatgtctctaaggttttgatgctgacaatgtataaaagaacaattggataccctaaattttgttgtagtatgcaggaacatagaattaca 23662276  T
Q  180 ttctgactctgaattcaa 197  Q
    ||||||||||||| ||||    
T  23662275 ttctgactctgaagtcaa 23662258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 3316186 - 3316119
Alignment:
Q  77 tgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactcta 144  Q
    ||||||||||||||| |||||||| ||||||||| ||| |||||||  |||||||||||| |||||||    
T  3316186 tgggttttagaacaaaatctctaatgttttgatgataaaaatgtatagaagaacaattgggtactcta 3316119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 6414996 - 6414881
Alignment:
Q  72 caaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcata 171  Q
    ||||||||||| ||||||||| ||| |||| |||| ||| ||| |||||||||||||| |||||| ||||||||   |  |||||||||||||||  |||    
T  6414996 caaagtgggttatagaacaatgtctttaaattttttatgataacaatgtatgaaagaataattgggtactctaatatgcattcaagtgtgcaggacgata 6414897  T
Q  172 aaattatattctgact 187  Q
     ||||| ||| |||||    
T  6414896 taattaaattatgact 6414881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 23183554 - 23183444
Alignment:
Q  77 tgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaatt 176  Q
    |||||||| | ||||| ||||| ||||| ||||| ||||||| |||||||||||||   || ||||||| | ||||||||||||||| || |||| ||||    
T  23183554 tgggtttttggacaatgtctcttaagttctgatgataataatttatgaaagaacaacctgacactctaatgtgtgttcaagtgtgcatgaccatataatt 23183455  T
Q  177 atattctgact 187  Q
    | ||| |||||    
T  23183454 aaattttgact 23183444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 7681513 - 7681578
Alignment:
Q  77 tgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactc 142  Q
    |||||||||||||||||||||||| ||||||||| ||| |||||||  |||||||| ||| |||||    
T  7681513 tgggttttagaacaatatctctaaggttttgatgataacaatgtatagaagaacaactgggtactc 7681578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 23655574 - 23655457
Alignment:
Q  80 gttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattata 179  Q
    ||||||||| ||| ||||||| ||||||||| |||  ||||||  ||||| |||||| |||||||| |  |||||  ||||| |||| |||| ||||| |    
T  23655574 gttttagaataatgtctctaaggttttgatgttaactatgtatataagaaaaattgggtactctaaagtttgttctggtgtgtaggaccatataattaaa 23655475  T
Q  180 ttctgactctgaattcaa 197  Q
    ||||||||||||| ||||    
T  23655474 ttctgactctgaagtcaa 23655457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 7666254 - 7666319
Alignment:
Q  77 tgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactc 142  Q
    ||||||||||||||||||||||||  |||||||| ||| |||||||  |||||||| ||| |||||    
T  7666254 tgggttttagaacaatatctctaagtttttgatgataacaatgtatagaagaacaactgggtactc 7666319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 19650781 - 19650724
Alignment:
Q  104 tttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtg 161  Q
    ||||||| ||||||||||||||| || |||||| ||| |||| |||||||||||||||    
T  19650781 tttgatgataataatgtatgaaataaaaattgggtaccctaatgcgtgttcaagtgtg 19650724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 189
Target Start/End: Original strand, 7144564 - 7144683
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatc 168  Q
    ||||||| || |||||| ||||||  |||| |||||||||||  || ||| ||||||||||||||||||||    || | |||||||||| ||||| | |    
T  7144564 aaccaaaatgagtttta-aacaatgactctgaagttttgatgagaacaatatatgaaagaacaattggatatgacaatgtgtgttcaagtatgcagaacc 7144662  T
Q  169 ataaaattatattctgactct 189  Q
    ||| ||||| |||||||||||    
T  7144663 atataattaaattctgactct 7144683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 32561883 - 32561988
Alignment:
Q  80 gttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattata 179  Q
    ||||||||||||| ||||||| ||||||||| |||| |||||||||| || ||||  ||||||||| |  |||| |||| || |||| |||| ||||| |    
T  32561883 gttttagaacaatgtctctaaggttttgatgataat-atgtatgaaa-aataatttaatactctaatgtatgtttaagtatgtaggaccatataattaaa 32561980  T
Q  180 ttctgact 187  Q
    ||||||||    
T  32561981 ttctgact 32561988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 1675008 - 1675102
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgca 163  Q
    |||||||||| ||||||||| |||    ||||  |||||||| |||||||||||  ||||||||||||||| ||||  |  ||||||||||||||    
T  1675008 aaccaaagtgagttttagaataatgctactaagattttgatgataataatgtatagaagaacaattggatattctattgtttgttcaagtgtgca 1675102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 1783447 - 1783369
Alignment:
Q  95 ctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaa 173  Q
    ||||| |||||||||| ||| || || |  ||||||||||||||| | |||   |||||||||||||||||||||||||    
T  1783447 ctctagagttttgatgataacaaagttttgaagaacaattggataatttaatatgtgttcaagtgtgcaggatcataaa 1783369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 4122590 - 4122671
Alignment:
Q  84 tagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcagg 165  Q
    |||||||||||||||||  |||| ||| ||| ||||||  ||||||||||||  |||  ||||| |||||| ||||||||||    
T  4122590 tagaacaatatctctaagattttaatgataacaatgtagaaaagaacaattgagtacaataacgtgtgttccagtgtgcagg 4122671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 39227386 - 39227475
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagt 158  Q
    ||||||||| | |||||||| ||| | ||||| ||||||| | ||| ||| ||||||||||||  | |||||||||| | ||||||||||    
T  39227386 aaccaaagtcgattttagaataatgtttctaaggttttgaagataacaatatatgaaagaacagattgatactctaaagtgtgttcaagt 39227475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 227
Target Start/End: Original strand, 35150106 - 35150261
Alignment:
Q  72 caaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcata 171  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||  |||| ||  | ||||||||| |||||  | ||||    
T  35150106 caaagtgagttttagaacaatgtctctaaagttttgatgataacaatgtatgaaataacaattgagtactttagtgtgtgttcaagggtgcaataccata 35150205  T
Q  172 aaattatattctgactctgaattcaacttgttggttctaaaacaccaagctttgaa 227  Q
    ||| || |||||||||   || |||| ||||||||||| ||||| |||||| ||||    
T  35150206 aaactaaattctgacttcaaagtcaagttgttggttctgaaacatcaagctctgaa 35150261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 24715650 - 24715758
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatc 168  Q
    ||||||||||||||||| | |||| ||| |||  |||||||| ||| ||| ||||||||||||||||| |||||||| | |||||||| |||||| || |    
T  24715650 aaccaaagtgggttttacatcaatgtctttaagattttgatgataacaatttatgaaagaacaattgggtactctaatgtgtgttcaattgtgcaagacc 24715749  T
Q  169 ataaaatta 177  Q
    ||| |||||    
T  24715750 atacaatta 24715758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 12285764 - 12285854
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtg 159  Q
    ||||||||||| ||||| |||||| ||| |||| |||||||| ||| |||||| |||||||||||||| |||||||| | || ||||||||    
T  12285764 aaccaaagtggattttaaaacaatgtctataaaattttgatgataacaatgtaagaaagaacaattgggtactctaatgtgttttcaagtg 12285854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 9736527 - 9736410
Alignment:
Q  81 ttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatat 180  Q
    |||||||||||| |||||| |||||||||| ||| ||||||||||||||||||| | ||  |||| |  |||||||| |  ||||| |||| |||||  |    
T  9736527 ttttagaacaatgtctctacagttttgatgataaaaatgtatgaaagaacaattaggtagcctaaagtttgttcaaggggtcaggaccatagaattaagt 9736428  T
Q  181 tctgactctgaattcaac 198  Q
    ||| ||||||||||||||    
T  9736427 tctaactctgaattcaac 9736410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 9883032 - 9883107
Alignment:
Q  102 gttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaatta 177  Q
    ||||||||||||| |||||||||||||||||||| |||||||||   ||||| |||||||||  | ||||||||||    
T  9883032 gttttgatggtaaaaatgtatgaaagaacaattgaatactctaatttgtgtttaagtgtgcactaccataaaatta 9883107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 19601508 - 19601627
Alignment:
Q  103 ttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgactctgaattcaacttgt 202  Q
    |||||||| |||||||||||||| ||| |||||  || | ||||  || ||||||| |||||||||||| ||||| ||||||| | | || |||| || |    
T  19601508 ttttgatgataataatgtatgaatgaataattgagtattgtaacatgtattcaagtatgcaggatcatataattaaattctgaatttaaaatcaagtttt 19601607  T
Q  203 tggttctaaaacaccaagct 222  Q
    ||||||||| ||| ||||||    
T  19601608 tggttctaatacatcaagct 19601627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 20748743 - 20748672
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatac 140  Q
    ||||||||||||| |||||||||| ||| ||| | |  |||| ||| |||||||||||||||||||||||||    
T  20748743 aaccaaagtgggtattagaacaatgtctataaggatacgatgataacaatgtatgaaagaacaattggatac 20748672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 7221347 - 7221262
Alignment:
Q  77 tgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgca 163  Q
    ||||||||| || ||||| ||||| ||||||||| ||| ||| ||| ||| |||||||||||||||||| |  ||||||||||||||    
T  7221347 tgggttttaaaataatatttctaaggttttgatgataaaaat-tataaaataacaattggatactctaaagtttgttcaagtgtgca 7221262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 23693038 - 23692967
Alignment:
Q  116 aatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgact 187  Q
    ||||||||||| ||||||||| |||||||| | ||||||||| | ||| || |||| ||||| |||||||||    
T  23693038 aatgtatgaaataacaattgggtactctaatgtgtgttcaagcgagcaagaccatataattaaattctgact 23692967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 16300692 - 16300733
Alignment:
Q  77 tgggttttagaacaatatctctaaagttttgatggtaataat 118  Q
    |||||||||||||||| ||| ||||||||||||| |||||||    
T  16300692 tgggttttagaacaatgtctttaaagttttgatgataataat 16300733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 7224311 - 7224279
Alignment:
Q  77 tgggttttagaacaatatctctaaagttttgat 109  Q
    |||||||||||||||||||||||| ||||||||    
T  7224311 tgggttttagaacaatatctctaaggttttgat 7224279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 24558953 - 24559019
Alignment:
Q  66 tttaaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaa 132  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||    
T  24558953 tttaaccaaagtgggttttagaacaatgtctttaaggttttgatgataataatgtatgaaagaacaa 24559019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 24599985 - 24600051
Alignment:
Q  66 tttaaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaa 132  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||    
T  24599985 tttaaccaaagtgggttttagaacaatgtctttaaggttttgatgataataatgtatgaaagaacaa 24600051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 11848263 - 11848353
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtg 159  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| ||| | ||||||||||||||||| | || | ||| | |||||||||||    
T  11848263 aaccaaagtgggttttacaacaatgtctctaaggttttgatgataacattgtatgaaagaacaatttggtattataatgtgtgttcaagtg 11848353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 18807535 - 18807449
Alignment:
Q  103 ttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgactct 189  Q
    |||||||| ||| ||  ||| ||| ||||||||||||  |||| | ||||||||||||| ||||||||||||||| ||||| |||||    
T  18807535 ttttgatgataacaaaatatcaaaaaacaattggatatgctaaggtgtgttcaagtgtgaaggatcataaaattaaattctaactct 18807449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 17771693 - 17771794
Alignment:
Q  119 gtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgactctgaattcaacttgttggttctaaaacacca 218  Q
    |||||||||||||||| |||||||||| | || |||||||||  | | | ||| ||||| ||| ||||| |||| ||||||| |||||| | ||||||||    
T  17771693 gtatgaaagaacaattagatactctaatgtgtattcaagtgtctaagtttatataattaaattatgactttgaagtcaacttattggttttgaaacacca 17771792  T
Q  219 ag 220  Q
    ||    
T  17771793 ag 17771794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 16687129 - 16687198
Alignment:
Q  118 tgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgact 187  Q
    |||||||||||| |||||| |||||||| | ||||| ||||||||| || |||| ||||| ||| |||||    
T  16687129 tgtatgaaagaataattgggtactctaatgtgtgtttaagtgtgcaagaccatagaattaaattatgact 16687198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 16686436 - 16686480
Alignment:
Q  81 ttttagaacaatatctctaaagttttgatggtaataatgtatgaa 125  Q
    ||||| |||||||||| ||||||||||||| ||||||| ||||||    
T  16686436 ttttaaaacaatatctttaaagttttgatgataataatatatgaa 16686480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 14761378 - 14761285
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgca 163  Q
    ||||| |||||||||||||||||| |||||||| |||||||| ||| ||||||||||| | ||||| | |||| ||||| |||||||||||||||    
T  14761378 aaccatagtgggttttagaacaatgtctctaaaattttgatgataacaatgtatgaaa-agcaatttggtactataacgtgtgttcaagtgtgca 14761285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 12869801 - 12869918
Alignment:
Q  102 gttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattctgactctgaattcaacttg 201  Q
    ||||||||  ||| |||||||||||||| || | | ||||| || | |||||||  ||||||||| |||| ||||| ||||||| |||||  ||||||||    
T  12869801 gttttgattataacaatgtatgaaagaataactaggtactcaaatgagtgttcagatgtgcaggaccatataattaaattctgaatctgatgtcaacttg 12869900  T
Q  202 ttggttctaaaacaccaa 219  Q
    |||||||| | |||||||    
T  12869901 ttggttctgagacaccaa 12869918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 33546652 - 33546579
Alignment:
Q  149 gtgttcaagtgtgcaggatcataaaattatattctgactctgaattcaacttgttggttctaaaacaccaagct 222  Q
    |||||||||| ||||||| |||  ||||| ||| ||| |||||| |||||||||||||||| ||| ||||||||    
T  33546652 gtgttcaagtctgcaggaccattgaattaaattttgattctgaagtcaacttgttggttctgaaataccaagct 33546579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 4317 - 4425
Alignment:
Q  69 aaccaaagtgggttttagaacaatatctctaaagttttgatggtaataatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatc 168  Q
    |||||||||||||||||||||||| ||| ||   || ||||| ||| || |||| ||| |||||||||||||||||| |  ||||| ||||||||||| |    
T  4317 aaccaaagtgggttttagaacaatgtctatatgattctgatgttaacaaagtataaaataacaattggatactctaatgtatgttcgagtgtgcaggacc 4416  T
Q  169 ataaaatta 177  Q
    ||| |||||    
T  4417 atataatta 4425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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