View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10470_low_25 (Length: 253)
Name: NF10470_low_25
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10470_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8437032 - 8437267
Alignment:
| Q |
1 |
gtgatgaacgcaaatattgctatacaatattnnnnnnnnnntgtactaatatactcaaaacaataaaaatcgttgtgatcctccaatatcttaaaacaca |
100 |
Q |
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| T |
8437032 |
gtgatgaacacaaatattgctatacaatattaaaaaaaa--tgtactaatatactcaaaacaataaaaatcgttgtgatcctccaatatcttaaaacaca |
8437129 |
T |
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| Q |
101 |
agtcccaacaccatttgatgagttgcttttatagaggcatcaaaaataagtattcagattatgaaagtagggtttatttgtacatgagtgggatctttgc |
200 |
Q |
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| T |
8437130 |
agtcccaacgccatttgatgagttgcttttatagaggcatcaaaaataagtattcagattatgaaagtagggtttatttgtacatgagtgggatctttgc |
8437229 |
T |
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| Q |
201 |
agttaaaattgaaaacaaagagtaaaaagataatattg |
238 |
Q |
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| T |
8437230 |
agttaaaattgaaaacaaagagtaaaaagataatattg |
8437267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 8414692 - 8414803
Alignment:
| Q |
51 |
atactcaaaacaataaaaatcgttgtgatcctccaatatcttaaaacacaagtcccaaca------ccatttgatgagttgcttttatagaggcatcaaa |
144 |
Q |
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| T |
8414692 |
atactcaaaacaatataaatcgttgtgatgctccaatatctt-aaacacaagtcccaacaatgacgccatttgatgagttgtttctatcgaggcatcaaa |
8414790 |
T |
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| Q |
145 |
aataagtattcag |
157 |
Q |
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| T |
8414791 |
aataagtattcag |
8414803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 8414812 - 8414914
Alignment:
| Q |
142 |
aaaaataagtattcagattatgaaagtagggtttatttgtac--atgagtgggatctttgcag----ttaaaattgaaaacaaagagtaaaaagataata |
235 |
Q |
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| T |
8414812 |
aaaaaaaagtattcagagtatgaaagtagggtttgtttgtacatataagtgggatctttgcagttaattaaaatcgaaaacaaagagcagaaagataata |
8414911 |
T |
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| Q |
236 |
ttg |
238 |
Q |
| |
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||| |
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| T |
8414912 |
ttg |
8414914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 10169460 - 10169424
Alignment:
| Q |
118 |
atgagttgcttttatagaggcatcaaaaataagtatt |
154 |
Q |
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| T |
10169460 |
atgagttgcttttatagcggcatcaaaactaagtatt |
10169424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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