View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10470_low_34 (Length: 217)
Name: NF10470_low_34
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10470_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 34509187 - 34509295
Alignment:
| Q |
2 |
aaatgaaatttgtgtggagagaaggtggaattttgtgtgaactgatgaatgttaccaaagagaaatgtaaagccattattcccatattctttctcttgat |
101 |
Q |
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| T |
34509187 |
aaatgaaatttgtgtggagagaaggtggaattttatgtgaaccgatgaatgttgccaaagagaaatagagagccattattcccatattttttgtcttgat |
34509286 |
T |
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| Q |
102 |
ccaccgcat |
110 |
Q |
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| T |
34509287 |
caaccgcat |
34509295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 44619745 - 44619853
Alignment:
| Q |
2 |
aaatgaaatttgtgtggagagaaggtggaattttgtgtgaactgatgaatgttaccaaagagaaatgtaaagccattattcccatattctttctcttgat |
101 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| | |||||||||| || |||| ||| ||||||| |
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| T |
44619745 |
aaatgaaatttgtgtggagagaaggtggaattttacgtgaaccgttgaatgttaccaaagagaaatgcagagccattatttccgtattttttgtcttgat |
44619844 |
T |
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| Q |
102 |
ccaccgcat |
110 |
Q |
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| T |
44619845 |
caaccgcat |
44619853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 44785129 - 44785208
Alignment:
| Q |
109 |
atgagagtaaatgcatgtaattttccataaaacactcatattccatacccttgactgagcatattcttggaaaactgatgg |
189 |
Q |
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| T |
44785129 |
atgagagtaaatgcatgtaatttcccataaaacactcctatt-catactcttgaccgggcccattattggaaaacttatgg |
44785208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 44621259 - 44621332
Alignment:
| Q |
112 |
agagtaaatgcatgtaattttccataaaacactcatattccatacccttgactgagcatattcttggaaaactga |
186 |
Q |
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| T |
44621259 |
agagtagatgcacataatttcccataaaacactcatattccataccc-tgactgagcccattcttaggaaactga |
44621332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 44785041 - 44785081
Alignment:
| Q |
3 |
aatgaaatttgtgtggagagaaggtggaattttgtgtgaac |
43 |
Q |
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| T |
44785041 |
aatgaaatttgtgtggaaagaaggtggaaatttgtgtgaac |
44785081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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