View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10470_low_7 (Length: 400)
Name: NF10470_low_7
Description: NF10470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10470_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 56469096 - 56468728
Alignment:
| Q |
21 |
actggatgatttaaagatatcagaggaagagatggaaatgtatgttgatatgcatcatattacaaacaagtcatcgtatacagttgtggaaacaatgtct |
120 |
Q |
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| T |
56469096 |
actggatgatttaaagatatcagaggaagagatggaaatgtatgttgatatgcatcatattaccaacaagtcatcgtatacagttgtggaaacaatgtct |
56468997 |
T |
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| Q |
121 |
ctagctaaaactgcagttcttttccgtgagcttggcctcaggcatttgttggtggtgccaaagacatccggagtaagaaacaatatactattacaatctt |
220 |
Q |
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| T |
56468996 |
ctagctaaaactgcagttcttttccgtgagcttggcctcaggcatttgttggtggtgccaaagacatccggagtaagaaacaatatactattacaatctt |
56468897 |
T |
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| Q |
221 |
gaataaacatatccatgtatttaagtatacattggctgactttgcaatcattaattacaattatccttgtttgttggctgggagtgagtattaactaaca |
320 |
Q |
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| T |
56468896 |
gaataaacatatccatgcatttaagtatacattggctgactttgcaatcattaattacaattatccttgtatgttggctgggagtgagtattaactaaca |
56468797 |
T |
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| Q |
321 |
attactaatatttgtggttgttatgcagagacctccaattgtgggaatcttgacaaggcacgacttcat |
389 |
Q |
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| T |
56468796 |
attactaatatttgtggttgttatgcagagacctccaattgtggggatcttgacaaggcacgacttcat |
56468728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 197
Target Start/End: Original strand, 155492 - 155640
Alignment:
| Q |
49 |
gagatggaaatgtatgttgatatgcatcatattacaaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtg |
148 |
Q |
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| T |
155492 |
gagatggaaatgtatgttgatcttcatccaatcacaaatacttctccatatactgttgttgaaacaatgtctcttgcaaaagctgctcttctgtttcggg |
155591 |
T |
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| Q |
149 |
agcttggcctcaggcatttgttggtggtgccaaagacatccggagtaag |
197 |
Q |
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| T |
155592 |
agcttggactcaggcatttgctagttgtgcctaagaaaccaggagtaag |
155640 |
T |
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