View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10471_high_13 (Length: 224)
Name: NF10471_high_13
Description: NF10471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10471_high_13 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10714324 - 10714547
Alignment:
| Q |
1 |
cagagtgtcgagtagtgcccatagtgagttgaggctcaggacatggtggataatagtgactaagaatgaagtgtccttttgcacaatccatgccttcaag |
100 |
Q |
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| T |
10714324 |
cagagtgtcgagtagtgcccatagtgagttgaggctcaggacatggtggataatagtgactaagaatgaagtgtccttttgcacaatccatgccttcaaa |
10714423 |
T |
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| Q |
101 |
atggtcagccttgagtccaagtccttctgataatagttcaaataaaaggctccccaatacatgaatttgcctagagtattccattgttacatccctacaa |
200 |
Q |
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| T |
10714424 |
atggtcagccttgagtccaagtccttctgataatagttcaaataaaagcctccccaatacatgaacttgcctagagtattccattgttacatccctacaa |
10714523 |
T |
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| Q |
201 |
attaaaatacatcaccaaagcagc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
10714524 |
attaaaatacatcaccaaagcagc |
10714547 |
T |
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Target: scaffold0032 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 33768 - 33962
Alignment:
| Q |
12 |
gtagtgcccatagtgagttgaggctcaggacatggtggataatagtgactaagaatgaagtgtccttttgcacaatccatgccttcaagatggtcagcct |
111 |
Q |
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||||| ||||||||||| | |||||| |||||||||||||||||||||| ||| | || ||||||| ||||||||||||||||||||||| || || |
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| T |
33768 |
gtagttcccatagtgagattaggctctggacatggtggataatagtgacatttaattatatgcccttttgtacaatccatgccttcaagatggttagtct |
33867 |
T |
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| Q |
112 |
tgagtccaagtccttctgataatagttcaaataaaaggctccccaatacatgaatttgcctagagtattccattgttacatccctacaaattaaa |
206 |
Q |
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| T |
33868 |
tgagtccaagtgcttcagataatagttcaaacacaagactccccaattcttgaatttgcttatagtattgcattgttacatccctacaaattaaa |
33962 |
T |
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