View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10471_high_14 (Length: 224)
Name: NF10471_high_14
Description: NF10471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10471_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 37080622 - 37080419
Alignment:
| Q |
1 |
agaatactgtccagatcccacagagatgcttgacacttcatttaagcgtaatattcttcatgtggcagcataccatggaaaacatgaggtagtagattac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
37080622 |
agaatactgtccagatcccacagagatgcttgacacttcatttaagcgtaatattcttcatgttgcagcatacaatggaaaacatgaggtagtagattac |
37080523 |
T |
|
| Q |
101 |
atactacaacaaagtcgtcgaatttgtgaacttgataaaatgataaatcaaaaggataataaaggagatagtcctttgcatctggctgcacaatcgtgtc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37080522 |
atactacaacaaagtcgtcgaatttgcgaacttgataaaatgataaatcaaaaggataataaaggagatactcctttgcatctggctgcacaatcgtgtc |
37080423 |
T |
|
| Q |
201 |
atcc |
204 |
Q |
| |
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|||| |
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| T |
37080422 |
atcc |
37080419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 37070789 - 37070585
Alignment:
| Q |
1 |
agaatactgtccagatcccacagagatgcttgacacttcatttaagcgtaatattcttcatgtggcagcataccatggaaaacatgaggtagtagattac |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||| ||||| | || |
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| T |
37070789 |
agaatactgtccagatcccactgagatgcttgacacttcatttaagcgtaatattcttcatgttgcagcaaaaaatggaaagcatgagctagtacaacac |
37070690 |
T |
|
| Q |
101 |
atactacaacaaagtcgtcgaatttgtgaacttgataaaatgataaatcaaaaggataataaaggagatagtcctttgcatctggctgcacaatcgtgtc |
200 |
Q |
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||||| | ||||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||| |
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| T |
37070689 |
atactgctgcaaagtcgtcgaattcctgaacttcataagatgataaatcaaaaggataagaaaggagatactcctttgcatctggctgcaaaatcgtgtc |
37070590 |
T |
|
| Q |
201 |
atccc |
205 |
Q |
| |
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||||| |
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|
| T |
37070589 |
atccc |
37070585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 36953652 - 36953848
Alignment:
| Q |
2 |
gaatactgtccagatcccacagagatgcttgacacttcatttaagcgtaatattcttcatgtggcagcataccatggaaaacatgaggtagtagattaca |
101 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| | |||||||||||||||| | ||| || || |||||||| ||||||| || | |||| |
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| T |
36953652 |
gaatattgtcctgatcccacagagatgcttgacacttctcatgagcgtaatattcttcacattgcatcaaactatggaaaatatgaggtggtgcaataca |
36953751 |
T |
|
| Q |
102 |
tactacaacaaagtcgtcgaatttgtgaacttgataaaatgataaatcaaaaggataataaaggagatagtcctttgcatctggctgcacaatcgtgtca |
201 |
Q |
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| |||||| ||| || | |||||| | |||| |||||||||||||| |||||||||||||||| ||||||||| |||| ||| ||| ||||| |
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| T |
36953752 |
ttctacaa------agtcaaagtagtgaacgttataagatgataaatcaaaaagataataaaggagatacccctttgcatttggcagcaagatcatgtca |
36953845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 12494595 - 12494413
Alignment:
| Q |
1 |
agaatactgtccagatcccacagagatgcttgacacttcatttaagcgtaatattcttcatgtggcagcataccatggaaaacatgaggtagtagattac |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| ||| || | |||||||| ||||||| || | ||| |
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| T |
12494595 |
agaatattgtcctgatcccacagagatgcttgacacttctcataaacgtaatattcttcatgttgcatcaaaatatggaaaatatgaggtggtgcaatac |
12494496 |
T |
|
| Q |
101 |
atactacaacaaagtcgtcgaatttgtgaacttgataaaatgataaatcaaaaggataataaaggagatagtcctttgcatctggctgc |
189 |
Q |
| |
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|| |||||| ||| |||| || ||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||||| |
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| T |
12494495 |
attctacaa------agtcaaattcctggacttgataagatgataaatcaaaaagataataaaggagatacccctttgcatttggctgc |
12494413 |
T |
|
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