View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10471_high_2 (Length: 403)
Name: NF10471_high_2
Description: NF10471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10471_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 2340957 - 2340587
Alignment:
| Q |
19 |
ctttgctcttgcaacaatgatatgtcgaaagaaatgctaactccaattctccgttttactattaaatgaacaagatgacataccgataaaccatatgcca |
118 |
Q |
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| T |
2340957 |
ctttgctcttgcaacaatgatatgtcgaaagaaatgctaactccaattctccgttttactagtaaatgaacaagatgacataccgataaaccatatgcca |
2340858 |
T |
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| Q |
119 |
gctgccggaaacaatatagttgttagaatcaatacagttgttctccagttgttaatactatcctgcattaccataatgtattaaaaatcatgaatcttgt |
218 |
Q |
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| T |
2340857 |
gctgccggaaacaatatagttgttagaatcaatacagttgttctccagctgttaatactatcctgcattaccataatgtatcaaaaatcatgaatcttgt |
2340758 |
T |
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| Q |
219 |
-atatcgcgtacgtaatacattttctgtgaccagtaattttctctatctcaacctccctctgtttcgcaagtaatggcatttaaacaatcatgctgtcac |
317 |
Q |
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| T |
2340757 |
aatatcacgtacgtaatacattttctgtgaccagtaattttctctatctcaacctccctctgtttcgcaagtaatggcatttaaacaatcatgctgtcac |
2340658 |
T |
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| Q |
318 |
gttgtttgaatcagatacttagaagtttgggaattaaattttagctattgatgtctctttaaatttatgat |
388 |
Q |
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| T |
2340657 |
gttgtttgaatcagatacttagaagtttgggaattaaattttagctattgatgtctctttaaatttatgat |
2340587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 2348691 - 2348596
Alignment:
| Q |
93 |
atgacataccgataaaccatatgccagctgccggaaacaatatagttgttagaatcaatacagttgttctccagttgttaatactatcctgcatta |
188 |
Q |
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| T |
2348691 |
atgacataccgataaaccatattccagccgctggaaacaatatggttgttaagatcaatgcagttgctctccagttgttaatgctatcctgcatta |
2348596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 36794170 - 36794253
Alignment:
| Q |
92 |
gatgacataccgataaaccatatgccagctgccggaaacaatatagttgttagaatcaatacagttgttctccagttgttaata |
175 |
Q |
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|||||| |||| ||||||||||| ||||||| ||||| ||||| |||||||||||||| | || |||||||||||||||||| |
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| T |
36794170 |
gatgacttacctataaaccatattgcagctgctggaaaaaatattgttgttagaatcaacgcggtagttctccagttgttaata |
36794253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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