View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10471_high_3 (Length: 362)

Name: NF10471_high_3
Description: NF10471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10471_high_3
NF10471_high_3
[»] chr1 (2 HSPs)
chr1 (60-318)||(32953549-32953809)
chr1 (18-63)||(32953837-32953882)
[»] chr2 (1 HSPs)
chr2 (154-303)||(36033641-36033789)
[»] chr5 (1 HSPs)
chr5 (138-349)||(27983575-27983785)
[»] chr7 (1 HSPs)
chr7 (127-276)||(7805576-7805725)
[»] scaffold0011 (1 HSPs)
scaffold0011 (145-288)||(228836-228978)
[»] chr8 (2 HSPs)
chr8 (204-292)||(37080819-37080911)
chr8 (232-297)||(35739654-35739721)
[»] chr6 (1 HSPs)
chr6 (212-297)||(29521794-29521879)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 60 - 318
Target Start/End: Complemental strand, 32953809 - 32953549
Alignment:
Q  60 ttgtcacaatcgcgttaaggttgtcgcaatttcgactgttgctgatgtctgcgttacagattgcggtcacaattaccttcaccacttactctcactcacc 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32953809 ttgtcacaatcgcgttaaggttgtcgcaatttcgactgttgctgatgtttgcgttacagattgcggtcacaattaccttcaccagttactctcactcacc 32953710  T
Q  160 ccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaacaacgaattcataaacaccaaaaatctcatctc 259  Q
    |||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32953709 ccactttattctttccaggttttactttcttacttatttttcaatgtcacaatattgaaacaagcaacaacgaattcataaacaccaaaaatctcatctc 32953610  T
Q  260 tatagtccgaactcacaacc--atattcacacagagacaaactcaaactcaaaattccaac 318  Q
    ||||||||||||||||||||  |||||| |||| |||||||||||||||||||||||||||    
T  32953609 tatagtccgaactcacaaccatatattcgcacaaagacaaactcaaactcaaaattccaac 32953549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 32953882 - 32953837
Alignment:
Q  18 gttctcctttcttttagatttgattgagaattttatttgtttttgt 63  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  32953882 gttctcctttctttcagatttgattgagaattttatttgtttttgt 32953837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 154 - 303
Target Start/End: Complemental strand, 36033789 - 36033641
Alignment:
Q  154 ctcaccccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaacaacgaattcataaacaccaaaaatct 253  Q
    |||||||||||||||||||||||| || ||||| || | || |||||| |||||||| || |||| |||||||| |||||||||||||||| ||||||||    
T  36033789 ctcaccccactttattctttccaggttctacttactcacttctttttcaatgtcacattactgaagcaagcaaccacgaattcataaacac-aaaaatct 36033691  T
Q  254 catctctatagtccgaactcacaaccatattcacacagagacaaactcaa 303  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  36033690 catctctatagtccgaactcacaaccatattcacacaaagacacactcaa 36033641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 138 - 349
Target Start/End: Original strand, 27983575 - 27983785
Alignment:
Q  138 tcaccacttactctcactcaccccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaacaacgaattca 237  Q
    |||||||||||||||| ||| ||| ||||||||||| ||| ||||||||||||| |  |||| | |||||||| ||||||| |||||||| ||||| |||    
T  27983575 tcaccacttactctcagtcaacccgctttattctttgcaggttttactttcttactc-ttttccaatgtcacattattgaagcaagcaaccacgaactca 27983673  T
Q  238 taaa-caccaaaaatctcatctctatagtccgaactcacaaccatattcacacagagacaaactcaaactcaaaattccaacnnnnnnnnctcactaaaa 336  Q
    |||| ||| |||  ||||||||||| ||||| |||||||||||||||||||||| ||||| |||| |||||||| |||||||        ||| ||||||    
T  27983674 taaatcactaaagttctcatctctaaagtccaaactcacaaccatattcacacaaagacacactc-aactcaaagttccaacttttttttctctctaaaa 27983772  T
Q  337 tctcatttcatct 349  Q
    |||||||||||||    
T  27983773 tctcatttcatct 27983785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 127 - 276
Target Start/End: Original strand, 7805576 - 7805725
Alignment:
Q  127 cacaattaccttcaccacttactctcactcaccccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaa 226  Q
    |||||||||| ||||||||| |||| ||||||| ||||||||| |||| || || | |||||  | || |||| | ||||||| ||| |||| |||||||    
T  7805576 cacaattaccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtcacgatactgaagcaagcaa 7805675  T
Q  227 caacgaattcataaacaccaaaaatctcatctctatagtccgaactcaca 276  Q
    | |||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  7805676 ctacgaattcataaacaccaaaaatcccatctctaaagtccaaactcaca 7805725  T

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Target: scaffold0011 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 228836 - 228978
Alignment:
Q  145 ttactctcactcaccccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaacaacgaattcataaacac 244  Q
    |||| |||||||||| ||||||| ||||||||| ||   |||||| | || |||| | |||||||  || | || |||||||| ||| ||||||||||||    
T  228836 ttaccctcactcacctcactttactctttccagatt---ctttctcatttcttttccaatgtcactgtactaaagcaagcaaccacggattcataaacac 228932  T
Q  245 caaaaatctcatctctatagtccgaact--cacaaccatattcaca 288  Q
    |||| |||||||||||| ||||||||||  ||||||||||||||||    
T  228933 caaatatctcatctctaaagtccgaactcacacaaccatattcaca 228978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 37080819 - 37080911
Alignment:
Q  204 tgtcacaatattgaaacaagcaacaacgaattcataaacaccaaaaatctcatctctatagtccgaa----ctcacaaccatattcacacaga 292  Q
    |||||||||| |||| |||||||| || |||||||||||||||| ||||||||||||| |||| |||    |||| |||||||||||||||||    
T  37080819 tgtcacaatactgaagcaagcaaccacaaattcataaacaccaataatctcatctctaaagtctgaactctctcagaaccatattcacacaga 37080911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 35739721 - 35739654
Alignment:
Q  232 aattcataaacaccaaaaatctcatctctatagtccgaact--cacaaccatattcacacagagacaa 297  Q
    ||||||||||||  |||||||||||||||| ||||| ||||  |||||||||||||||||| ||||||    
T  35739721 aattcataaacataaaaaatctcatctctaaagtccaaactcacacaaccatattcacacaaagacaa 35739654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 29521794 - 29521879
Alignment:
Q  212 tattgaaacaagcaacaacgaattcataaacaccaaaaatctcatctctatagtccgaactcacaaccatattcacacagagacaa 297  Q
    ||||||| |||| ||| | |||||||||||||  |||||||||||||||| |  || | ||||||||||| |||| ||| ||||||    
T  29521794 tattgaagcaaggaaccatgaattcataaacatgaaaaatctcatctctaaaacccaagctcacaaccatcttcatacaaagacaa 29521879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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