View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10471_low_2 (Length: 420)
Name: NF10471_low_2
Description: NF10471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10471_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 37157454 - 37157042
Alignment:
| Q |
1 |
gacacaatcccctgcaacctgtagcaatgaaataccaaatgggaagggaaggaattgaagcacttagcatatgcatcaagaatgtggttgaactgttttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37157454 |
gacacaatcccctgcaacctgtagcaatgaaataccaaatgggaagggaaggaattgaagcacttagcatatgcatcaagaatgtggttgaactgttttt |
37157355 |
T |
|
| Q |
101 |
ataccaagtagtaagttgttttcataaactatgatnnnnnnnntcatgaaataagttgaaaatgaaaatagtttatagacatgtcataaactattttcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37157354 |
ataccaagtagtaagttgttttcataaactatgataaaaaaa-tcatgaaataagttgaaaatgaaaatagtttatagacatgtcataaactattttcat |
37157256 |
T |
|
| Q |
201 |
acattctcacatatagttacataagtgattatgtaatgagataaatatttagaaatataccttctaattatagcttgcaattgtgctcttcgaacattgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37157255 |
acattctcacatatagttacataagtgattatgtaatgagataaatatttagaaatataccttctaattatagcttgcaattgtgctcttcgaacattgt |
37157156 |
T |
|
| Q |
301 |
ccttagatgggaagccagtgctatcccaatcctctggtatatcgtttttgcctctcataacaagttctttcaagcatgtttcttcactttcttccagctc |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37157155 |
ccttagatgggaagccagtgctatcccaatcctctggtatatcgtttttgcttctcataacaagttctttcaagcatgtttcttcactttcttccagctc |
37157056 |
T |
|
| Q |
401 |
aagattcttaagct |
414 |
Q |
| |
|
|||||||||||||| |
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|
| T |
37157055 |
aagattcttaagct |
37157042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 5 - 414
Target Start/End: Complemental strand, 37202805 - 37202397
Alignment:
| Q |
5 |
caatcccctgcaacctgtagcaatgaaataccaaatgggaagggaaggaattgaagcacttagcatatgcatcaagaatgtggttgaactgtttttatac |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37202805 |
caatcccctgcaacctgtagcaatgaaataccaaatgggaagggaaggaattgaagcacttagcatatgcatcaagaatgtggttgaactgtttttatac |
37202706 |
T |
|
| Q |
105 |
caagtagtaagttgttttcataaactatgatnnnnnnnntcatgaaataagttgaaaatgaaaatagtttatagacatgtcataaactattttcatacat |
204 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37202705 |
caagtagtaagttgttttcataaactatgataaaaaaa-tcatgaaataagttgaaaatgaaaatagtttatagacatgtcataaactattttcatacat |
37202607 |
T |
|
| Q |
205 |
tctcacatatagttacataagtgattatgtaatgagataaatatttagaaatataccttctaattatagcttgcaattgtgctcttcgaacattgtcctt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37202606 |
tctcacatatagttacataagtgattatgtaatgagataaatatttagaaatataccttctaattatagcttgcaattgtgctcttcgaacattgtcctt |
37202507 |
T |
|
| Q |
305 |
agatgggaagccagtgctatcccaatcctctggtatatcgtttttgcctctcataacaagttctttcaagcatgtttcttcactttcttccagctcaaga |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37202506 |
agatgggaagccagtgctatcccaatcctctggtatatcgtttttgcttctcataacaagttctttcaagcatgtttcttcactttcttccagctcaaga |
37202407 |
T |
|
| Q |
405 |
ttcttaagct |
414 |
Q |
| |
|
|||||||||| |
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|
| T |
37202406 |
ttcttaagct |
37202397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 34544168 - 34544129
Alignment:
| Q |
162 |
atgaaaatagtttatagacatgtcataaactattttcata |
201 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
34544168 |
atgaaaatagtttatggacatgtcataaactgttttcata |
34544129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 41170563 - 41170599
Alignment:
| Q |
165 |
aaaatagtttatagacatgtcataaactattttcata |
201 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
41170563 |
aaaatagcttataaacatgtcataaactattttcata |
41170599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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