View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10471_low_4 (Length: 362)
Name: NF10471_low_4
Description: NF10471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10471_low_4 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 60 - 318
Target Start/End: Complemental strand, 32953809 - 32953549
Alignment:
| Q |
60 |
ttgtcacaatcgcgttaaggttgtcgcaatttcgactgttgctgatgtctgcgttacagattgcggtcacaattaccttcaccacttactctcactcacc |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32953809 |
ttgtcacaatcgcgttaaggttgtcgcaatttcgactgttgctgatgtttgcgttacagattgcggtcacaattaccttcaccagttactctcactcacc |
32953710 |
T |
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| Q |
160 |
ccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaacaacgaattcataaacaccaaaaatctcatctc |
259 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32953709 |
ccactttattctttccaggttttactttcttacttatttttcaatgtcacaatattgaaacaagcaacaacgaattcataaacaccaaaaatctcatctc |
32953610 |
T |
|
| Q |
260 |
tatagtccgaactcacaacc--atattcacacagagacaaactcaaactcaaaattccaac |
318 |
Q |
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|||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |
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| T |
32953609 |
tatagtccgaactcacaaccatatattcgcacaaagacaaactcaaactcaaaattccaac |
32953549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 32953882 - 32953837
Alignment:
| Q |
18 |
gttctcctttcttttagatttgattgagaattttatttgtttttgt |
63 |
Q |
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| T |
32953882 |
gttctcctttctttcagatttgattgagaattttatttgtttttgt |
32953837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 154 - 303
Target Start/End: Complemental strand, 36033789 - 36033641
Alignment:
| Q |
154 |
ctcaccccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaacaacgaattcataaacaccaaaaatct |
253 |
Q |
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| T |
36033789 |
ctcaccccactttattctttccaggttctacttactcacttctttttcaatgtcacattactgaagcaagcaaccacgaattcataaacac-aaaaatct |
36033691 |
T |
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| Q |
254 |
catctctatagtccgaactcacaaccatattcacacagagacaaactcaa |
303 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
36033690 |
catctctatagtccgaactcacaaccatattcacacaaagacacactcaa |
36033641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 138 - 349
Target Start/End: Original strand, 27983575 - 27983785
Alignment:
| Q |
138 |
tcaccacttactctcactcaccccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaacaacgaattca |
237 |
Q |
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|||||||||||||||| ||| ||| ||||||||||| ||| ||||||||||||| | |||| | |||||||| ||||||| |||||||| ||||| ||| |
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| T |
27983575 |
tcaccacttactctcagtcaacccgctttattctttgcaggttttactttcttactc-ttttccaatgtcacattattgaagcaagcaaccacgaactca |
27983673 |
T |
|
| Q |
238 |
taaa-caccaaaaatctcatctctatagtccgaactcacaaccatattcacacagagacaaactcaaactcaaaattccaacnnnnnnnnctcactaaaa |
336 |
Q |
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|||| ||| ||| ||||||||||| ||||| |||||||||||||||||||||| ||||| |||| |||||||| ||||||| ||| |||||| |
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| T |
27983674 |
taaatcactaaagttctcatctctaaagtccaaactcacaaccatattcacacaaagacacactc-aactcaaagttccaacttttttttctctctaaaa |
27983772 |
T |
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| Q |
337 |
tctcatttcatct |
349 |
Q |
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||||||||||||| |
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| T |
27983773 |
tctcatttcatct |
27983785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 127 - 276
Target Start/End: Original strand, 7805576 - 7805725
Alignment:
| Q |
127 |
cacaattaccttcaccacttactctcactcaccccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaa |
226 |
Q |
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|||||||||| ||||||||| |||| ||||||| ||||||||| |||| || || | ||||| | || |||| | ||||||| ||| |||| ||||||| |
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| T |
7805576 |
cacaattaccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtcacgatactgaagcaagcaa |
7805675 |
T |
|
| Q |
227 |
caacgaattcataaacaccaaaaatctcatctctatagtccgaactcaca |
276 |
Q |
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| |||||||||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
7805676 |
ctacgaattcataaacaccaaaaatcccatctctaaagtccaaactcaca |
7805725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 228836 - 228978
Alignment:
| Q |
145 |
ttactctcactcaccccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaacaacgaattcataaacac |
244 |
Q |
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|||| |||||||||| ||||||| ||||||||| || |||||| | || |||| | ||||||| || | || |||||||| ||| |||||||||||| |
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| T |
228836 |
ttaccctcactcacctcactttactctttccagatt---ctttctcatttcttttccaatgtcactgtactaaagcaagcaaccacggattcataaacac |
228932 |
T |
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| Q |
245 |
caaaaatctcatctctatagtccgaact--cacaaccatattcaca |
288 |
Q |
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|||| |||||||||||| |||||||||| |||||||||||||||| |
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| T |
228933 |
caaatatctcatctctaaagtccgaactcacacaaccatattcaca |
228978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 37080819 - 37080911
Alignment:
| Q |
204 |
tgtcacaatattgaaacaagcaacaacgaattcataaacaccaaaaatctcatctctatagtccgaa----ctcacaaccatattcacacaga |
292 |
Q |
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|||||||||| |||| |||||||| || |||||||||||||||| ||||||||||||| |||| ||| |||| ||||||||||||||||| |
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| T |
37080819 |
tgtcacaatactgaagcaagcaaccacaaattcataaacaccaataatctcatctctaaagtctgaactctctcagaaccatattcacacaga |
37080911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 35739721 - 35739654
Alignment:
| Q |
232 |
aattcataaacaccaaaaatctcatctctatagtccgaact--cacaaccatattcacacagagacaa |
297 |
Q |
| |
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|||||||||||| |||||||||||||||| ||||| |||| |||||||||||||||||| |||||| |
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| T |
35739721 |
aattcataaacataaaaaatctcatctctaaagtccaaactcacacaaccatattcacacaaagacaa |
35739654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 29521794 - 29521879
Alignment:
| Q |
212 |
tattgaaacaagcaacaacgaattcataaacaccaaaaatctcatctctatagtccgaactcacaaccatattcacacagagacaa |
297 |
Q |
| |
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||||||| |||| ||| | ||||||||||||| |||||||||||||||| | || | ||||||||||| |||| ||| |||||| |
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| T |
29521794 |
tattgaagcaaggaaccatgaattcataaacatgaaaaatctcatctctaaaacccaagctcacaaccatcttcatacaaagacaa |
29521879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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