View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10473_high_17 (Length: 241)
Name: NF10473_high_17
Description: NF10473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10473_high_17 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 67 - 241
Target Start/End: Complemental strand, 39562452 - 39562278
Alignment:
| Q |
67 |
caatattgctttagaaaacgaacaaaaagagtaatttaaaaatgatattttacaatggaacaacatgtagcagagacacagactatattactgtaagctt |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39562452 |
caatattgctttagaaaacgaacaaaaagagtaatttaaaaatgatattttacaatggaacaacatgtagcagagacacagactatattactgtaagctt |
39562353 |
T |
|
| Q |
167 |
gatgagtggtaggaaaattttgcaatgttttctaataatagttaatgtacattatcacaactagtgagtttaatt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39562352 |
gatgagtggtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgagtttaatt |
39562278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 39572578 - 39572466
Alignment:
| Q |
121 |
atggaacaacatgtagcagagacacagactatattactgtaagcttgatgagtggtaggaaaattttgcaatgttttctaataatagttaatgtacatta |
220 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39572578 |
atggaataacatgtcgcagagacacagactatgattttgtaagcttg--------taggaaaattttgcaatgttttctaataataattaatgtacatta |
39572487 |
T |
|
| Q |
221 |
tcacaactagtgagtttaatt |
241 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39572486 |
tcacaactagtgagtttaatt |
39572466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 39567141 - 39567011
Alignment:
| Q |
54 |
aaaatttgctcctcaatattgctttagaaaacgaacaaaaagagtaatttaaaaatgatatt----ttacaatggaacaacatgtagcagagacacagac |
149 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||| ||| |||||||||||| ||||||| ||| |||||| ||||||| |||||||||||||| |
|
|
| T |
39567141 |
aaaattcgctcctca-tattgctttagaaaaggaa---aaatagtaatttaaaa-tgatattaactttatgatggaataacatgtcgcagagacacagac |
39567047 |
T |
|
| Q |
150 |
tatattactgtaagcttgatgagtggtaggaaaatt |
185 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||| |
|
|
| T |
39567046 |
tatatatttgtaagcttaatgagtggtaggaaaatt |
39567011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University