View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10473_high_3 (Length: 482)
Name: NF10473_high_3
Description: NF10473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10473_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 1432791 - 1433251
Alignment:
| Q |
1 |
cattgaaaataaaattcatggtcccaagaaatgttaagaacatcaccttctattgatgaaatgattctctaaatcatttgttatttaattcctatgatta |
100 |
Q |
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| T |
1432791 |
cattgaaaattaaattcatggtcccaagaaatgttaagaacatcaccttctattgatgaaatgattctctaaatcatttgttatttaattccgatgatta |
1432890 |
T |
|
| Q |
101 |
acataatgtagcacactaactgattaacataaaacgatagacaatgttttaaaaactaaaccagacatctaactcatgaggccttcgtgttatagttcaa |
200 |
Q |
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| T |
1432891 |
acataatgtagcacactaactgattaacataaaacgatagacaatgttttaaaaactaaaccagacatctaactcatgaggccttcgtgttatagttcaa |
1432990 |
T |
|
| Q |
201 |
ctgctttaaaccgtctgaaatggaataaaactgcaatcgataagacataatagcatatattcatttatttaaacggtaacttcttccacgaaaagcaatt |
300 |
Q |
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| T |
1432991 |
ctgctttaaaccgtctgaaacggaataaaactgcaatcgataagacatattagcatatattcatttatttaaacggtaacttcttccacgaaaagcaatt |
1433090 |
T |
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| Q |
301 |
ccatcaccctgattttgctgctgaggtgaagaagcattaatgccggttgtttcctgtgaagtgcttcttgttgttgtttgatttccaccaagacggttgc |
400 |
Q |
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| T |
1433091 |
ccatcaccctgattttgctgctgaggtgaagaagcattaatgccgcttgtttcctgtgaagtgcttcttgttgttgtttgatttccaccaagacggttgc |
1433190 |
T |
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| Q |
401 |
ttcttcctttgaatataattccagctgatggattagattgcactggagcatttatttgggt |
461 |
Q |
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| T |
1433191 |
ttcttcctttgaatataattccagctgatggattagattgcactggagcatttatttgggt |
1433251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 267 - 436
Target Start/End: Original strand, 1421806 - 1421977
Alignment:
| Q |
267 |
atttaaacggtaacttcttccacgaaaagcaattccatcaccctgattttgctgctgaggtgaagaagcattaatgccggttgtttcctgtgaagt---- |
362 |
Q |
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||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| ||| |||||| | | ||||| |
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| T |
1421806 |
atttaaatggtaacttcttccacgaaaagtaat-ccatcaccctgattttgctgctgagcggaagaagcat---tgctacttgtttgccgcgaagtactt |
1421901 |
T |
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| Q |
363 |
--gcttcttgttgttgtttgatttccaccaagacggttgcttcttcctttgaatataattccagctgatggattag |
436 |
Q |
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| T |
1421902 |
cgccttcatcttgctgcttgagttccagcaagacggttgcttcttcctctgaatataattccagctgatggattag |
1421977 |
T |
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