View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10473_high_4 (Length: 449)
Name: NF10473_high_4
Description: NF10473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10473_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Complemental strand, 48965381 - 48964966
Alignment:
| Q |
16 |
acatcaagagccctgcattgtattgggcagagtaatgcatttgattcatgcacaaaataattgttgctccaagttcaggttttatgagtcgctgacttgt |
115 |
Q |
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| T |
48965381 |
acatcaagagccctgcattgtattgggcagagtaatgaatttgattcatgcacaaaataattgttgcttcaagttcaggttttatgagtcgctgacttgt |
48965282 |
T |
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| Q |
116 |
ttcttttttccgtagtgctgcatagcaaacgcaaaggccaatatgagtagaggcaacaggaattgcaatgtctttgtaacaaatcctgatgattgatccc |
215 |
Q |
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| T |
48965281 |
ttcttttttccgtagtgctgcatagcatacgcaaaggccaatatgagtagaggcaacaggaattgcaatgtctttgtaacaaatcctgatgattgatccc |
48965182 |
T |
|
| Q |
216 |
taacactttgtgcctgtgtagatggtggtgaattgtgctcaacttttgttggaacggtggacgtgtcgacatggccaacaaagtacttatgcatcatttc |
315 |
Q |
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| T |
48965181 |
taacactttgtgcctgtgtagatggtggtgaattgtgctcaacttttgttggaacggtggacgtgtcgacatggccaacaaagtactcatgcatcatttc |
48965082 |
T |
|
| Q |
316 |
tattgcagagtcactgtgacccacgtcttcaaaatcaacagtagcatccttccctgtaagaacacatatttttattgtcataaaccaaccagattgctaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48965081 |
tattgcagagtcactgtgacccacgtcttcaaaatcaacagtagcatccttccctgtaagaacacatatttttattgtcataaaccaaccagattgctaa |
48964982 |
T |
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| Q |
416 |
tatgttatgaaccaac |
431 |
Q |
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| T |
48964981 |
tatattatgaaccaac |
48964966 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 42048553 - 42048486
Alignment:
| Q |
307 |
catcatttctattgcagagtcactgtgacccacgtcttcaaaatcaacagtagcatccttccctgtaa |
374 |
Q |
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| T |
42048553 |
catcatttctctagcagaatcactgtgtcccacatcttcaaaatcattagttgcatctttccctgtaa |
42048486 |
T |
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