View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10473_low_10 (Length: 317)
Name: NF10473_low_10
Description: NF10473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10473_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 834291 - 834005
Alignment:
| Q |
10 |
gagagaagaatcatgttttagtgaagagtttattggactcttcccctcttttctaactcttgtattcaaagattctgaatttgaacttgaaccgttacca |
109 |
Q |
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| T |
834291 |
gagagtagaatcatgttttagtgaagagtttattggactcttccccttttttctaactcttgtattcaaagattctgaatttgaac------cgttacca |
834198 |
T |
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| Q |
110 |
ttcatagacatgtatatttcatctccaatatcttcccattcttcaccatgatacgaagtctcaccgcgctttcctatattgagatgattaaaaaattaaa |
209 |
Q |
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| T |
834197 |
ttcatagacatgtatatttcatctccaatatcttcccatccttcaccatgataccaagtctcaccgcgctttcctatattgagatgattaaaaaattaca |
834098 |
T |
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| Q |
210 |
tgtaattcactacttattactaaaaaacacaagcatagagatataaagtttgaacttgattcactaagcttaacactatcaagtatcaacgtg |
302 |
Q |
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| T |
834097 |
tgtaattcactacttattactaaaaaacacaagcatagagatataaagtttgaacttgattcactaagcttaacactatcaagtatcaacgtg |
834005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 812791 - 812742
Alignment:
| Q |
46 |
actcttcccctcttttctaactcttgtattcaaagattctgaatttgaac |
95 |
Q |
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| T |
812791 |
actcttcccctcttttctaatccttttattccaagattctgaaattgaac |
812742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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