View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10473_low_11 (Length: 315)
Name: NF10473_low_11
Description: NF10473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10473_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 146 - 304
Target Start/End: Complemental strand, 10186512 - 10186355
Alignment:
| Q |
146 |
cagacttctggaattccgggtttctacaaccaccaacgacatgaatcagacagagcagacgataaaatatataagtgggaggaacgaaaaagctaggaaa |
245 |
Q |
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| T |
10186512 |
cagacttctggaattccgggtttctacaaccaccaacgacatgaatcagacagagcagatgataaaatatataagtgggaggaacg-aaaagctaggaaa |
10186414 |
T |
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| Q |
246 |
taatcaacagggcaggcttttttatgtccaagcatgaaattttagatctattcgttcat |
304 |
Q |
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| T |
10186413 |
taatcaacagggcaggcttttttatgtccaagcatgaaattttagatctattcgttcat |
10186355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 10186639 - 10186579
Alignment:
| Q |
19 |
agtggtatgtctcagcctattaatggataacttcaaaagcttaatgtgacataaaacaaga |
79 |
Q |
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| T |
10186639 |
agtggtatgtctcagcctattaatggataacttcaaaagcttaatgtgacataaaacaaga |
10186579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 304
Target Start/End: Complemental strand, 28931650 - 28931501
Alignment:
| Q |
154 |
tggaattccgggtttctacaaccaccaacgacatgaatcagacagagcagacgataaaatatataagtgggaggaacgaaaaagctaggaaataatcaac |
253 |
Q |
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|||||||| ||||| ||||||| ||||| |||| |||||| ||| ||||||| ||||||| |||||||| |||||| ||||| ||| |||| || |||| |
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| T |
28931650 |
tggaattctgggttcctacaacgaccaatgacaagaatcaaacatagcagacaataaaatctataagtgagaggaaagaaaac-ctaagaaaaaaacaac |
28931552 |
T |
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| Q |
254 |
agggcaggcttttttatgtccaagcatgaaattttagatctattcgttcat |
304 |
Q |
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| T |
28931551 |
agagcaagctttttcatgtctgagcatgaaaggttagatctattccttcat |
28931501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 28931797 - 28931746
Alignment:
| Q |
19 |
agtggtatgtctcagcctattaatggataacttcaaaagcttaatgtgacat |
70 |
Q |
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||||||||||||||||||||||||| ||| ||||||||| | ||||| |||| |
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| T |
28931797 |
agtggtatgtctcagcctattaatgaatatcttcaaaagttaaatgttacat |
28931746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 35122499 - 35122606
Alignment:
| Q |
146 |
cagacttctggaattccgggtttctacaaccaccaacgacatgaatcagacagagcagacgataaaatatataagtgggaggaacgaaaaagctaggaaa |
245 |
Q |
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||||||| |||||||| |||||||||||||||||||| ||| |||| | ||||||||| ||| | ||| ||| ||||||||||| | ||||||||||| | |
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| T |
35122499 |
cagacttttggaattctgggtttctacaaccaccaacaacaagaattaaacagagcaggcgacataatctatgagtgggaggaaag-aaaagctaggaga |
35122597 |
T |
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| Q |
246 |
taatcaaca |
254 |
Q |
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||||||||| |
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| T |
35122598 |
taatcaaca |
35122606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 35122362 - 35122411
Alignment:
| Q |
21 |
tggtatgtctcagcctattaatggataacttcaaaagcttaatgtgacat |
70 |
Q |
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|||||||||||||||||| |||| ||||||||||||| ||||||| |||| |
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| T |
35122362 |
tggtatgtctcagcctatcaatgaataacttcaaaagtttaatgttacat |
35122411 |
T |
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