View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10473_low_14 (Length: 291)
Name: NF10473_low_14
Description: NF10473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10473_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 8178839 - 8179099
Alignment:
| Q |
18 |
gtttgcgtcttgttcgttatggatctcttcatggaaatgtacttggtgagaaaatacttttaagccgtaaagcttaggttgactgttacttgtttttact |
117 |
Q |
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| T |
8178839 |
gtttgcgtcttgttcgttatggatctcttcatggaaatgtacttggtgagaaaatacttttaagccgtaaaacttaggttgactgttacttgtttttact |
8178938 |
T |
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| Q |
118 |
tcnnnnnnngacagaattacttgttttttctctccatataatctgaatttaaacttccaaaatcaatgtaccaaagttggataattgtattgatataggc |
217 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8178939 |
tctttttttgacagaattacttgttttttttctccatataatctgaatttaaacttccaaaatcaatgtaccaaagttggataattgtattgatataggc |
8179038 |
T |
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| Q |
218 |
ttttctagacgttagctagttgtaaggtgtaatcaccatagtgacatctttgatccacttc |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8179039 |
ttttctagacgttagctagttgtaaggtgtaatcaccatagtgaaatctttgatccacttc |
8179099 |
T |
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