View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10473_low_15 (Length: 266)
Name: NF10473_low_15
Description: NF10473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10473_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 15817907 - 15818118
Alignment:
| Q |
20 |
tagaggacttcagatttcaatgattcttgctggaaagaaagacacttacaaaactgaatgatgagttgtcatatttttcaggtaacatcttgcatttcct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
15817907 |
tagaggacttcagatttcaatgattcttgctggaaagaaagacacttacaaaactgaatgatgttttatcatatttttcaggtaacatcttgcatttcct |
15818006 |
T |
|
| Q |
120 |
atatgattttaatttatatgcgccatcattaaaaccatttaactttaacgataactacttgtagactcg------tgat--agtgtaaattttcctctac |
211 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||| ||| || ||||| |||| | ||||||||||||||||| |
|
|
| T |
15818007 |
atatgatttttat-----------atcattaaaaccatttaactttaacgataacgtcttctaaactcgtacatatgattgattgtaaattttcctctac |
15818095 |
T |
|
| Q |
212 |
tcactcattccatatttttccaa |
234 |
Q |
| |
|
||||| ||||| ||||||||||| |
|
|
| T |
15818096 |
tcactgattccctatttttccaa |
15818118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 45935826 - 45935949
Alignment:
| Q |
20 |
tagaggacttcagatttcaatgattcttgctggaaagaaagacacttacaaaactgaatgatgagttgtcatatttttcaggtaacatcttgcatttcct |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
45935826 |
tagaggacttcagatttcaaggattcttgctggaaagaaagacactaataaaactgaatgatgttttattatatttttcaggtaacatcttgcatttcct |
45935925 |
T |
|
| Q |
120 |
atatgattttaatttatatgcgcc |
143 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
45935926 |
atatgattttaatttatatgcgcc |
45935949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 45936054 - 45936099
Alignment:
| Q |
189 |
tgatagtgtaaattttcctctactcactcattccatatttttccaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45936054 |
tgatagtgtaaattttcctctactcactgattccatatttttccaa |
45936099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 45935985 - 45936030
Alignment:
| Q |
144 |
atcattaaaaccatttaactttaacgataactacttgtagactcgt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
45935985 |
atcattaaaaccatttaactttaacgataactacttctaaactcgt |
45936030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 5191684 - 5191792
Alignment:
| Q |
38 |
aatgattcttgctggaaagaaa-gacacttacaaaactgaatgatgagttgtcatatttttcaggtaacatcttgcatttcctatatgattttaatttat |
136 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||| || | || || |||||||||| |
|
|
| T |
5191684 |
aatgattcttgcttgaaaaaaaagacacttacaaaactgaatgatatgttatcatatttttcgggtaacatcttgcaatt--tttacgagtttaatttat |
5191781 |
T |
|
| Q |
137 |
atgcgccatca |
147 |
Q |
| |
|
||| ||||||| |
|
|
| T |
5191782 |
atgtgccatca |
5191792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 5164243 - 5164326
Alignment:
| Q |
38 |
aatgattcttgctggaaagaaagacacttacaaaactgaatgatgagttgtcatatttttcaggtaacatcttgcatttcctat |
121 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||| ||| ||||| ||||| |||||||| || || ||||||| |
|
|
| T |
5164243 |
aatgattcttgccggaaagaaagacacttacaaaactaaatgatatgttatcataattttccggtaacattttccacttcctat |
5164326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 5186089 - 5186130
Alignment:
| Q |
40 |
tgattcttgctggaaagaaagacacttacaaaactgaatgat |
81 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
5186089 |
tgattcttgcaggaaagaaagacacttacaaaactaaatgat |
5186130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University