View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10473_low_17 (Length: 250)
Name: NF10473_low_17
Description: NF10473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10473_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24013947 - 24014186
Alignment:
| Q |
1 |
atcaaacccaactacaatgcaaagaaaaatcaagaataacaccattgaaaaggatccacatgagaaagatacaaatcaatgcacagaacgtccaagaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24013947 |
atcaaacccaactacaatgcaaagaaaaatcaagaataacaccattgaaaaggatccacatgagaaagatacaaatcaatgcacagaacgtccaagaaga |
24014046 |
T |
|
| Q |
101 |
gggcgtataatataagcaatcaaattaaaattgaaaaggatccacatcaaaatttggagattaaatggtttggtcattagatgaatacccctaaagcttt |
200 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24014047 |
gagcgtattatataagcaatcaaattaaaattgaaaaggatccacatcaaaatttggagattaaatggtttgttcattagatgaatacccctaaagcttt |
24014146 |
T |
|
| Q |
201 |
caatacatgctcaggtgcaatcgtccttctttcctctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24014147 |
caatacatgctcaggtgcaatcgtccttctttcctctctg |
24014186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University