View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10473_low_18 (Length: 248)
Name: NF10473_low_18
Description: NF10473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10473_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 39 - 237
Target Start/End: Complemental strand, 35420805 - 35420607
Alignment:
| Q |
39 |
gagccaaagaataactagaatcagtggctctcaccacaataatacagacgaagcagaaagcacgacacagacctgccacaccttacaacaataaacccac |
138 |
Q |
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| T |
35420805 |
gagccaaagaataactagaatcagtggctctcaccacaataatacagacaaagcagaaagcacgacacagacctgccacaccttacaacaataaacccac |
35420706 |
T |
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| Q |
139 |
aaaaacaaacaccattagagacccaataaacctgaaacaatgaacaagggacttcaattaatgcatgcatattgtcccttctctactcacattatctct |
237 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420705 |
aaaaacaaacaccattagagacccaatacacctgaaacaatgaacaagggacttcaattaatgcatgcatattgtcccttctctactcacattatctct |
35420607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 39 - 237
Target Start/End: Complemental strand, 35429944 - 35429746
Alignment:
| Q |
39 |
gagccaaagaataactagaatcagtggctctcaccacaataatacagacgaagcagaaagcacgacacagacctgccacaccttacaacaataaacccac |
138 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429944 |
gagccaaagaataactagaatcagtggctctcaccacaataatacagacaaagcagaaagcacgacacagacctgccacaccttacaacaataaacccac |
35429845 |
T |
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| Q |
139 |
aaaaacaaacaccattagagacccaataaacctgaaacaatgaacaagggacttcaattaatgcatgcatattgtcccttctctactcacattatctct |
237 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429844 |
aaaaacaaacaccattagagacccaatacacctgaaacaatgaacaagggacttcaattaatgcatgcatattgtcccttctctactcacattatctct |
35429746 |
T |
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