View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10473_low_2 (Length: 506)
Name: NF10473_low_2
Description: NF10473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10473_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 488
Target Start/End: Complemental strand, 48965435 - 48964966
Alignment:
| Q |
19 |
atcaattgagtctaaatgaacagctagtatggttgtttagcaagacatcatagtacatcaagagccctgcattgtattgggcagagtaatgcatttgatt |
118 |
Q |
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| T |
48965435 |
atcaattgagtctaaatgaacagctagtatggttgtttagcaagacatcatagtacatcaagagccctgcattgtattgggcagagtaatgaatttgatt |
48965336 |
T |
|
| Q |
119 |
catgcacaaaataattgttgctccaagttcaggttttatgagtcgctgacttgtttcttttttccgtagtgctgcatagcaaacgcaaaggccaatatga |
218 |
Q |
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| T |
48965335 |
catgcacaaaataattgttgcttcaagttcaggttttatgagtcgctgacttgtttcttttttccgtagtgctgcatagcatacgcaaaggccaatatga |
48965236 |
T |
|
| Q |
219 |
gtagaggcaacaggaattgcaatgtctttgtaacaaatcctgatgattgatccctaacactttgtgcctgtgtagatggtggtgaattgtgctcaacttt |
318 |
Q |
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| T |
48965235 |
gtagaggcaacaggaattgcaatgtctttgtaacaaatcctgatgattgatccctaacactttgtgcctgtgtagatggtggtgaattgtgctcaacttt |
48965136 |
T |
|
| Q |
319 |
tgttggaacggtggacgtgtcgacatggccaacaaagtacttatgcatcatttctattgcagagtcactgtgacccacgtcttcaaaatcaacagtagca |
418 |
Q |
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| T |
48965135 |
tgttggaacggtggacgtgtcgacatggccaacaaagtactcatgcatcatttctattgcagagtcactgtgacccacgtcttcaaaatcaacagtagca |
48965036 |
T |
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| Q |
419 |
tccttccctgtaagaacacatatttttattgtcataaaccaaccagattgctaatatgttatgaaccaac |
488 |
Q |
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| T |
48965035 |
tccttccctgtaagaacacatatttttattgtcataaaccaaccagattgctaatatattatgaaccaac |
48964966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 431
Target Start/End: Complemental strand, 42048553 - 42048486
Alignment:
| Q |
364 |
catcatttctattgcagagtcactgtgacccacgtcttcaaaatcaacagtagcatccttccctgtaa |
431 |
Q |
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|||||||||| | ||||| |||||||| ||||| |||||||||||| ||| ||||| |||||||||| |
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| T |
42048553 |
catcatttctctagcagaatcactgtgtcccacatcttcaaaatcattagttgcatctttccctgtaa |
42048486 |
T |
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