View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10473_low_24 (Length: 227)
Name: NF10473_low_24
Description: NF10473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10473_low_24 |
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| [»] chr3 (9 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 39561815 - 39562034
Alignment:
| Q |
1 |
ttaaagaatatttttaatgtgttggtttgagtttgagttgttgtatgtgatgcattatatagtgtggaaaaggtaaattggaaatgctttccaggaagct |
100 |
Q |
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| T |
39561815 |
ttaaagaatatttttaatgtgttggtttgagtttgagttgttgtatgtgatgcattatatagtgtggaaaaggtaaattggaaatgctttccaggaagct |
39561914 |
T |
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| Q |
101 |
gctcttatccattatccttgagcactaacatagtgtatagtataaaattgatccaatatctcagttgtgctttttgtgaatatattaataccatcttaat |
200 |
Q |
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| T |
39561915 |
gctcttat-------ccttgagcactaacatagtgtatagtataaaattgatccaatatctcagttgtgccttttgtgaatatattaataccatcttaat |
39562007 |
T |
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| Q |
201 |
cttaaaccatgcacgtgagattgtgtt |
227 |
Q |
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| T |
39562008 |
cttaaaccatgcacgtgagattgtgtt |
39562034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 39566511 - 39566712
Alignment:
| Q |
20 |
tgttggtttgagtttgagttgt--tgtatgtgatgcattatatagtgtggaaaaggtaaattggaaatgctttccaggaagctgctcttatccattatcc |
117 |
Q |
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| T |
39566511 |
tgtttgtttgagtttgagttgtgttgtatatgatgtattatatagtgtgcaaaaagtaaactggaaatgctttccaggaagctgctcttattc------- |
39566603 |
T |
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| Q |
118 |
ttgagcactaacatagtgtatagtataaaattgatccaatatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtg |
217 |
Q |
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| T |
39566604 |
ttgagcactaacatagtgtattatataaaattgatccaatatctaagttgtgctctttgtgaatatattaataccatcttaatcttaaactatgcacatg |
39566703 |
T |
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| Q |
218 |
agattgtgt |
226 |
Q |
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| T |
39566704 |
agattgtgt |
39566712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 54 - 227
Target Start/End: Original strand, 39560558 - 39560724
Alignment:
| Q |
54 |
attatatagtgtggaaaaggtaaattggaaatgctttccaggaagctgctcttatccattatccttgagcactaacatagtgtatagtataaaattgatc |
153 |
Q |
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| T |
39560558 |
attatgtagtgtggaaaaagtaaataggaaatgctttccatgaagttgatcttatct-------ttgaacactaacatagtatattgtataaaattgatc |
39560650 |
T |
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| Q |
154 |
caatatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtgagattgtgtt |
227 |
Q |
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| T |
39560651 |
cagtatctcagttgtgccttttgtgaatatattaataccaacttattcttgaatcatgcacatcagattatgtt |
39560724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 39572030 - 39572217
Alignment:
| Q |
21 |
gttggtttgagtttgagttgttgtatgtgatgcattatatagtgtggaaaaggtaaattggaaatgctttccaggaagctgctcttatccattatccttg |
120 |
Q |
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| T |
39572030 |
gttggtttgagtttgaattgttgtaggtgatgtattatatagtgttgaaaaagtaaattggaaatgctttacaggaagctgctc-------ttatccttg |
39572122 |
T |
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| Q |
121 |
agcactaacatagtgtatagtataaaattgatccaatatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtgaga |
220 |
Q |
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| T |
39572123 |
aacactaa------------tataaaatttgtccagtatctcagttgttcattttgcgaatatattactaccaacttaatcttatatcatgcacatgaga |
39572210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 39581249 - 39581181
Alignment:
| Q |
25 |
gtttgagtttgagttgttgtatgtgatgcattatatagtgtggaaaaggtaaattggaaatgctttcca |
93 |
Q |
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| T |
39581249 |
gtttgagtttaagttgttgtatgcgatgcattatatagtgtggaaaaagtaatgtggaaatgctttcca |
39581181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 39581146 - 39581076
Alignment:
| Q |
144 |
aaaattgatccaatatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcac |
214 |
Q |
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| T |
39581146 |
aaaattgatctagtatctcagttgtgctttttgtgcatatattaataccaacttaatattgaatcatgcac |
39581076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 39584755 - 39584685
Alignment:
| Q |
157 |
tatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtgagattgtgtt |
227 |
Q |
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| T |
39584755 |
tatctcagttgtgccttttgtgaatatatggacaccaacttaatcttaaatcatgcgcattagattgtgtt |
39584685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 39584896 - 39584828
Alignment:
| Q |
25 |
gtttgagtttgagttgttgtatgtgatgcattatatagtgtgga-aaaggtaaattggaaatgctttcc |
92 |
Q |
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| T |
39584896 |
gtttgagtttgagttgttgctagtgatgtattatatagagttgagaaaagtaaattggaaatgctttcc |
39584828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 39574603 - 39574545
Alignment:
| Q |
165 |
ttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtgagattgt |
224 |
Q |
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| T |
39574603 |
ttgtgctttttgtgaatattttaataccaaattaatcttaaa-catgcacatcagattgt |
39574545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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