View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10473_low_6 (Length: 379)
Name: NF10473_low_6
Description: NF10473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10473_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 41416219 - 41416571
Alignment:
| Q |
11 |
gagatgaagggaaaagtgaaggagaagattcagtttcacttttaatatccaagaatctaaatatggaacatgtcaattctacaatttaccttcatttata |
110 |
Q |
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| T |
41416219 |
gagatgaagggaaaagtgaaagagaagattcagtttcacttttaatatccaagaatctaaatatggaacatgtcaattctaccatttaccttcatttata |
41416318 |
T |
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| Q |
111 |
gagttttgtgtattaaaattttgatgccagatacgatgttatttgattcttttgtgtatatttatcaaagataaatacatagtgtgttgtaccgtctata |
210 |
Q |
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| T |
41416319 |
gagttttgtgtattaaaattttgatgccagatacgatgttatttgattcttttgtgtatatttatcaaagataagtacatattgtgttgtaccgtctata |
41416418 |
T |
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| Q |
211 |
gagacacttaaaagtttgattttaaaatagag-ggactattttataagtttgaataaatggaccaaaaatacacttaagcctaatatttcaacaaagcaa |
309 |
Q |
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|| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
41416419 |
gaaacacttaaaagtttgagtttaaaatagagcggactattttataagtttgaataaatggaccaaaaatgcacttaaacctaatatttcaacaaagcaa |
41416518 |
T |
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| Q |
310 |
gtcaaactctctagtgttaactatccataacagtaacacaagtagtagtgact |
362 |
Q |
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| T |
41416519 |
gtcaaactctctagtgttaactatccataacagtaacacaagtagtagtgact |
41416571 |
T |
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