View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10474_high_3 (Length: 460)
Name: NF10474_high_3
Description: NF10474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10474_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Original strand, 3238502 - 3238933
Alignment:
| Q |
14 |
aggtcacagctcgatcgaaactgtgctgtatatgtatacggtaacccttcattttgagaaatggcgagtgtcacagctcgatcaacctgtaattgattga |
113 |
Q |
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| T |
3238502 |
aggtcacagctcgatcgaaactgtgctgtatatgtatacggtaacccttcattttgagaaatggcgagtgtcacagctcgatcaacctgtaattgattga |
3238601 |
T |
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| Q |
114 |
gaattaccgtatacatatatagcacagtttcttcttaaagatcagtacatgatcaagttgttacatcaggaaattgaaagcttaaccgataatgtaatga |
213 |
Q |
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| T |
3238602 |
gaattaccgtatacatatatagcacagtttcttcttaaagatcagtacatgatcaagttgttacatcaggaaattgaaagcttaaccgataatgtaatga |
3238701 |
T |
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| Q |
214 |
tcttcatactttgtaagttaatatgattctttctcaatagtgttggagttgaagctgtaagatttatgagatggagaatcatcactgaaacagtaaagca |
313 |
Q |
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| T |
3238702 |
tcttcatactttgtaagttaatatgattctttctcaatagtgttggagttgaagctgtaagatttatgagatggagaatcatcactgaaacagtaaagca |
3238801 |
T |
|
| Q |
314 |
attgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcagaaagtttcttcctca |
413 |
Q |
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| T |
3238802 |
attgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcagaaagtttcttcctca |
3238901 |
T |
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| Q |
414 |
aaggctattcatgctctgagtaaattccaatt |
445 |
Q |
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| T |
3238902 |
aaggctattcatgctctgagtaaattccaatt |
3238933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 3242949 - 3243022
Alignment:
| Q |
326 |
tccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcaga |
399 |
Q |
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| T |
3242949 |
tccccatggacgattgagcaattcacatggacgattaagaacttctctaagtgtgattctcagatgtactcaga |
3243022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 3242864 - 3242915
Alignment:
| Q |
220 |
tactttgtaagttaatatgattctttctcaatagtgttggagttgaagctgt |
271 |
Q |
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| T |
3242864 |
tactttataaattaatataattctttctcaatggtgttagagttgaagctgt |
3242915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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