View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10474_high_7 (Length: 239)
Name: NF10474_high_7
Description: NF10474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10474_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 48483222 - 48483447
Alignment:
| Q |
14 |
aaattgaagagtgatagtttagagattaaattgatggtttattcttgaattataccgtaatctataatgaattcttaaattatgcagtaatctacgacga |
113 |
Q |
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| T |
48483222 |
aaattgaagagtgatagtttagagattaaattgatggtttattcttgaattatacagtaatctataatgaattcttaaattatgcagtaatctacgacga |
48483321 |
T |
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| Q |
114 |
atgatgatgatatctcgagcaacttccctccttcggttagtattgctcggcatttggttcctaataattttctaatcttggattgatgggtccaataaca |
213 |
Q |
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| T |
48483322 |
atgatgatgatatctcgagcaacttccctccttcggttagtattgctcggcatttggttcctaataattttctaatcttggattaatgggtccaataaca |
48483421 |
T |
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| Q |
214 |
aatagtaacaaaccacactaatattc |
239 |
Q |
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| T |
48483422 |
aatagtaacaaacgacactaatattc |
48483447 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 14198247 - 14198212
Alignment:
| Q |
24 |
gtgatagtttagagattaaattgatggtttattctt |
59 |
Q |
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| T |
14198247 |
gtgatagtttagagattaaattgatcgtttattctt |
14198212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 2205217 - 2205184
Alignment:
| Q |
25 |
tgatagtttagagattaaattgatggtttattct |
58 |
Q |
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| T |
2205217 |
tgatagtttagggattaaattgatggtttattct |
2205184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 35464875 - 35464912
Alignment:
| Q |
20 |
aagagtgatagtttagagattaaattgatggtttattc |
57 |
Q |
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| T |
35464875 |
aagagtgatattttagagactaaattgatggtttattc |
35464912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 41811803 - 41811770
Alignment:
| Q |
25 |
tgatagtttagagattaaattgatggtttattct |
58 |
Q |
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| T |
41811803 |
tgatagtttagagattgaattgatggtttattct |
41811770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 26004158 - 26004122
Alignment:
| Q |
21 |
agagtgatagtttagagattaaattgatggtttattc |
57 |
Q |
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| T |
26004158 |
agagtgataatttagagactaaattgatggtttattc |
26004122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 43279076 - 43279044
Alignment:
| Q |
22 |
gagtgatagtttagagattaaattgatggttta |
54 |
Q |
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| T |
43279076 |
gagtgatagtttagagactaaattgatggttta |
43279044 |
T |
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