View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10474_low_1 (Length: 653)
Name: NF10474_low_1
Description: NF10474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10474_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 638
Target Start/End: Original strand, 3983510 - 3984126
Alignment:
| Q |
18 |
acattgtggtgcaataactttcggaaaccaattcatccaaactttttattaggnnnnnnngtagaatttaaacaatttnnnnnnntgttgagtttaagca |
117 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
3983510 |
acattgtggtgcaataacttccggaaaccaactcatccaaactttttattagaaaaaaaagtagaatttaaacaattttaaaaaatgttgagtttaagca |
3983609 |
T |
|
| Q |
118 |
accaatatgcaccctcctttctttaaagtagcaagctattccatttctctctacgaaaggttgtagtctgaattcagtcaatacacactagatggaatga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
3983610 |
accaatatgcaccctcctttctttaaagtagcaagctattccatttctctctacgaaagtttgtagtctgaattcagtcaatacacaatagatggaatga |
3983709 |
T |
|
| Q |
218 |
tcaatagcaatatcaataatcttaatcacaatgttaataaaatccaactgttcgaacgtgaataaattatattatcttcgcctttatatagaaagttata |
317 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3983710 |
tcaatagcaatatcaataatcttaaccacagtgttaataaaatccaattgttcaaacgcgaataaattatattatcttcgcctttatatagaaaattata |
3983809 |
T |
|
| Q |
318 |
tagtaggcttcccgcgttgggcatatttcaagcgtgtggttgcttggttatgttaaacatagtaggttttgaggtctatagggatgttaaacatagtagg |
417 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |||||||||||||||| | |||| |
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| T |
3983810 |
tagtaggcttcccgcattgggcatatttcaagcgtgcggttgcttggtgaggttaaacatagtaggttttggggtctatagggatgttgcgtgcaatagg |
3983909 |
T |
|
| Q |
418 |
ttt-tgatgttaaaccgagattgtggtatcccattga-nnnnnnngcaccattggatagttgatattctcttgacatgttgatgtacaagtctttaattg |
515 |
Q |
| |
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||| |||| ||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
3983910 |
tttgggatg-------gagattgtggtatcccattgattttttttgcaccgttggatagttgatattcttttgacatgttgatgtacaagcctttaattg |
3984002 |
T |
|
| Q |
516 |
tacttgggttgtttagtttttatttgca-ttggtactattgttttgtccttgtacggcttgagttatttttaatacgttttttaatagctatttcattta |
614 |
Q |
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| T |
3984003 |
tacttgggttgtatagtttttatttgcatttggtactattgttttgtccttatacggcttgagttatttttaatacgttatttaatagctattgcattta |
3984102 |
T |
|
| Q |
615 |
tgagacacagtgacatgtacaagc |
638 |
Q |
| |
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| T |
3984103 |
tgagacactgttgcatgtacaagc |
3984126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 227 - 638
Target Start/End: Complemental strand, 32971492 - 32971087
Alignment:
| Q |
227 |
atatcaataatcttaatcacaatgttaataaaatccaactgttcgaacgtgaataaattatattatcttcgcctttatatagaaagttatatagtaggct |
326 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32971492 |
atatcaataatcttaaccacagtgttaataaaatccaactgttcaaacgcgaataaattatattatcttcgcctttatatagaaaattatatagtaggct |
32971393 |
T |
|
| Q |
327 |
tcccgcgttgggcatatttcaagcgtgtggttgcttggttatgttaaacatagtaggttttgaggtctatagggatgttaaacatagtaggttttg-atg |
425 |
Q |
| |
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| |||| |||||||||||| ||| |||| |||||||||| | |||||||||||||||||||| ||||||||| |||||| | ||||||| | ||| |
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| T |
32971392 |
ttccgcattgggcatattttaagtgtgtagttgcttggtgaggttaaacatagtaggttttggggtctatagagatgttgcgtgcaataggtttgggatg |
32971293 |
T |
|
| Q |
426 |
ttaaaccgagattgtggtatcccattgannnnnnn-gcaccattggatagttgatattctcttgacatgttgatgtacaagtctttaattgtacttgggt |
524 |
Q |
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| T |
32971292 |
-------gagattgtggtatcccattgattttttttgcaccgttggatagttgatattcttttgacatgttgatgtacaagcctttaattgtacttgggt |
32971200 |
T |
|
| Q |
525 |
tgtttagtttttatttgcattggtactattgttttgtccttgtacggcttgagttatttttaatacgttttttaatagctatttcatttatgagacacag |
624 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |
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| T |
32971199 |
tgtttagtttttatttgcatt-gtactattgttttgtccttatacggcttgagttatttttaatacgttttttaatagttattgcatttatgagacactg |
32971101 |
T |
|
| Q |
625 |
tgacatgtacaagc |
638 |
Q |
| |
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| ||||||||||| |
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| T |
32971100 |
ttgcatgtacaagc |
32971087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 20181001 - 20180937
Alignment:
| Q |
229 |
atcaataatcttaatcacaatgttaataaaatccaactgttcgaacgtgaataaattatattatc |
293 |
Q |
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|||||||||||||| ||| || ||| ||||||| ||||||| |||||||||||||||||||||| |
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| T |
20181001 |
atcaataatcttaaccaccgtgataaaaaaatcccactgttcaaacgtgaataaattatattatc |
20180937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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