View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10474_low_11 (Length: 242)
Name: NF10474_low_11
Description: NF10474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10474_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 35376325 - 35376112
Alignment:
| Q |
15 |
atgaacaactaacaatattttagtccaaaaatctttaaacatcccataattttgtcccttaaatcaataaaattcttaattgatatcaggaactaagaat |
114 |
Q |
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| T |
35376325 |
atgaacaactaacaatattttagtccaaaaatctttaaacatcccataattttgtcccttaaatcaataaaattcttaattgatatcaggaactaagaat |
35376226 |
T |
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| Q |
115 |
catcggtcacatgagtctttttattagtccttgtagttattgaaattgtcttgaattgactaatgtgatctagggttttgaatttcatggcttattttgg |
214 |
Q |
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| T |
35376225 |
catcggtcacatgagtctttttattagtcattgtagttattgaaattgtcttgaattgactaatgtgttctagggttttgaatttcatggcttattttgg |
35376126 |
T |
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| Q |
215 |
aatgttactaattt |
228 |
Q |
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|||||||||||||| |
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| T |
35376125 |
aatgttactaattt |
35376112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 35382870 - 35382764
Alignment:
| Q |
123 |
acatgagtcttttta-ttagtccttgtagttattgaaattgtcttgaattgactaatgtgatctagggttttgaatttcatggcttattttggaatgtta |
221 |
Q |
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|||||||||||||| |||||| | |||||| ||||||||||| |||| ||| ||||||||||| | ||| |||||||| | ||||||||||| ||| |
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| T |
35382870 |
acatgagtctttttccttagtcaatttagttactgaaattgtctggaatggaccaatgtgatctacgatttccaatttcatagactattttggaatttta |
35382771 |
T |
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| Q |
222 |
ctaattt |
228 |
Q |
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|||||| |
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| T |
35382770 |
ttaattt |
35382764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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