View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10474_low_14 (Length: 233)
Name: NF10474_low_14
Description: NF10474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10474_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 11079570 - 11079772
Alignment:
| Q |
13 |
gaagaagataaaagtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctc |
112 |
Q |
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| T |
11079570 |
gaagaagataaaagtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgttttgttgagctttggaagcttagggagattttctaaggctc |
11079669 |
T |
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| Q |
113 |
aaattaatgagatagctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagtt |
212 |
Q |
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| T |
11079670 |
aaattaatcagatagctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagtt |
11079769 |
T |
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| Q |
213 |
gtt |
215 |
Q |
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||| |
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| T |
11079770 |
gtt |
11079772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 11018828 - 11018973
Alignment:
| Q |
31 |
tgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgagatagcta |
130 |
Q |
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| T |
11018828 |
tgtttgagttggctcgactcgcaaccaagtcaaagcgtcgtgttgttgagctttggaagcatgggaagattttctagggctcaattgaatgagatagcta |
11018927 |
T |
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| Q |
131 |
ttggtttggaaaaaagtgaacaaagattcttgtggattgttaggag |
176 |
Q |
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| T |
11018928 |
ttggattggagaaaagtgagcaaagattcttgtgggttgttaggag |
11018973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 11002434 - 11002595
Alignment:
| Q |
18 |
agataaaagtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaatt |
117 |
Q |
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| T |
11002434 |
agatgaaaatgggtgtttgatttggcttgactcgcaacctagtcaaagcgtcgtgtttttgagttttggaagcatggggagattttctaaggctcagttg |
11002533 |
T |
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| Q |
118 |
aatgagatagctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcga |
179 |
Q |
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| T |
11002534 |
aatgagatagctattggattggagaaaagtgagcaaagattcttatggattgtaaggagcga |
11002595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 10982201 - 10982399
Alignment:
| Q |
15 |
agaagataaaagtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaa |
114 |
Q |
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| T |
10982201 |
agaagatgaaaatgggtgtctaagttggcttgagtcgcaacctattcaaagcgtcgtgttgttaagttttggaagcatgggaagattttctaaggctcag |
10982300 |
T |
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| Q |
115 |
attaatgagatagctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttg |
213 |
Q |
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| T |
10982301 |
ttgaatgagatagcacttggattggaaaaaagtgagcaaagattcttgtgggttattaggagcgagttggatttagaggagcaaagtttggacgagttg |
10982399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 213
Target Start/End: Original strand, 10968295 - 10968449
Alignment:
| Q |
59 |
gtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgagatagctattggtttggaaaaaagtgaacaaagatt |
158 |
Q |
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| T |
10968295 |
gtcaaagcgtcgtgttgttaagttttggaagcatgggaagattttctaaggctcagttgaatgagatagcacttggattggaaataagtgagcaaagatt |
10968394 |
T |
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| Q |
159 |
cttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttg |
213 |
Q |
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| T |
10968395 |
cttgtgggttgttaggagtgagttggacttagaggagcaaagtttggacgagttg |
10968449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 18300190 - 18300086
Alignment:
| Q |
25 |
agtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgaga |
124 |
Q |
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| T |
18300190 |
agtgggtgtttgagttggctcaacttgcaacctagtcaaagtgttgtgtttttgagctttggaagctatggaagatttttaaagcgtcaaataaaagaga |
18300091 |
T |
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| Q |
125 |
tagct |
129 |
Q |
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||||| |
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| T |
18300090 |
tagct |
18300086 |
T |
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