View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10474_low_3 (Length: 563)
Name: NF10474_low_3
Description: NF10474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10474_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 20 - 551
Target Start/End: Complemental strand, 19540098 - 19539568
Alignment:
| Q |
20 |
tcaagagggatgtgagccagactgatctcgcccaattacactccataaacaaatgatcaattatttcaatacaaatgtctcatacatgatacaacacaca |
119 |
Q |
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| T |
19540098 |
tcaagagggatgtgagccagactgatctcgcccaattacactccataaacaaatgatcaattatttcaatacaaatgtctcatacatgatacaacacaca |
19539999 |
T |
|
| Q |
120 |
aaggagaacaagtaacacaattacctggttttggggactacactttgtagccatgtcggaaaggcagccaagccatctcccaaattcaaattcctttacc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19539998 |
aaggagaacaagtaacacaattacctggttttggggactacactttgtagccatgtcggaaaggcagccaagccatctcccaaattcaaattccattaca |
19539899 |
T |
|
| Q |
220 |
acctcccactctccacataccccgtatggatactgatctcttctcggacattagcgatacttctccaggcataactcgagttatatccaatagtgccttt |
319 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19539898 |
acctcccactctccacataccc-gcatggatactgatctcttctcggacattagcgatacttcttcaggcataactcgagttatatccaatagtgccttt |
19539800 |
T |
|
| Q |
320 |
tagaacatttggtcagaagaagttcgtcattgtgaattagacgccatccctttattgccaaattataatcttttaagagtatataaatccaaccttcctt |
419 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19539799 |
tagaacatttggtcagaagaagttcgtcattttgaattagacgccatccctttattgccaaattataatcttttaagagtacataaatccaaccttcctt |
19539700 |
T |
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| Q |
420 |
tcttcttcttctccttcaacacattctgcaactaatacagtgaattttcttttctattttaaggttggcacgtccttttattcataagttcaaaatttgg |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19539699 |
tcttcttcttctccttcaacacattctgcaactaatacagtgaattttcttttctattttaaggttggcacgtccccttattcataagttcaaaatttgg |
19539600 |
T |
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| Q |
520 |
ataaatagagcttcattctcacacctttgctt |
551 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
19539599 |
ataaatagagcttcattctcacacctttgctt |
19539568 |
T |
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