View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10474_low_5 (Length: 434)
Name: NF10474_low_5
Description: NF10474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10474_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 56147638 - 56147225
Alignment:
| Q |
1 |
tgaaaagcccctctaggtagaatgaatctccaaagcaaagggcgttggaactcaaaagaaccctctgatgaaaaaggtaggttctttgagtccaacttta |
100 |
Q |
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| T |
56147638 |
tgaaaagcccctctaggtagaatgaatctccaaagcaaagggcgttggaactcaaaagaaccctctgatgaaaaaggtaggttctttgagtccaacttta |
56147539 |
T |
|
| Q |
101 |
catttgaaagctcttggccctttgaaaagaaaataacctgagataatggttggttaaatctgttaggatgaagaattagttatgctattttagcacaagg |
200 |
Q |
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| T |
56147538 |
catttgaaagctcttggccctttgaaaagaaaataatctgagataatggttggttaaatctgttaggatgaagaattagttattctattttagcacaagg |
56147439 |
T |
|
| Q |
201 |
gacagagaggtttgtggatgtgctgacagtatgtaccattaaccaaccaaacaggctggtcaaatacaaaaatgacctttttccctaataatgtatttga |
300 |
Q |
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| T |
56147438 |
gacagagaggtttgtggatgtgctgacagtatgtaccattaaccaaccaaacaggctggtcaaatacaaaaatgacctttttcc---ttaatgtatttga |
56147342 |
T |
|
| Q |
301 |
caaaacatcaaccaatataatatatttggaaataacacattaacttagggaagggtccttaaggttgcatagttgtcattcttcttgcatggtaaggatg |
400 |
Q |
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| T |
56147341 |
caaaacatcaaccaatataatatatttggaaataacacattaacttagggaagggtccttaaggttgcatagttgtcattcttcttgcatggtaaggatg |
56147242 |
T |
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| Q |
401 |
gtttaggattatgatct |
417 |
Q |
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| T |
56147241 |
gtttaggattatgatct |
56147225 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 5346183 - 5346232
Alignment:
| Q |
155 |
taaatctgttaggatgaagaattagttatgctattttagcacaagggaca |
204 |
Q |
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| T |
5346183 |
taaatcttctaggatgaagaattagttatgctattttaggaaaagggaca |
5346232 |
T |
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