View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10474_low_6 (Length: 429)
Name: NF10474_low_6
Description: NF10474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10474_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 510747 - 510357
Alignment:
| Q |
18 |
gttttaggctcagtaaaattgtggttaatttattgtgttcttttttatctatga--attattcaaaataagttttgttccaannnnnnnatagttaaaca |
115 |
Q |
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| T |
510747 |
gttttaggctcagtaaaattgtggttaatttattgtgttcttttttatctatgagaattattcaaaataagttttgttccaatttttt-atagttaaaca |
510649 |
T |
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| Q |
116 |
aatttagnnnnnnnnctt--------ctttccgtctaacaaattactaactttctcgacatgcagcacatgattctcagacatgacaaattaggtcacaa |
207 |
Q |
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| T |
510648 |
aatttagtttttttttttttctttttctttccgtctaacaaattactaactttctcgacatgcagcacatgattctcagacatgacaaattaggtcacaa |
510549 |
T |
|
| Q |
208 |
agttgcttaaaaaa-ggacctattgtgacaatgacaagaaggaagatatttttatacaaacaaatgaaatagattgtatttttagtttgttcattcatcg |
306 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
510548 |
agttgcttaaaaaaaggacctattgtgacaatgacaagaaggaagatatttttatacaaacaaatgaaatagattgtatttttagtttgttcat----cg |
510453 |
T |
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| Q |
307 |
taaatacaggtgaaaagtagactcaaataacatgaaaatgtattattaattgatatttttattacaatatttaatcctataatc-tataatagatc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
510452 |
taaatacaggtgaaaagtagactcaaataacatgaaaatgtattattaattgatatttttattacaatatttaatcctataatcttataatagatc |
510357 |
T |
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