View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10474_low_7 (Length: 408)
Name: NF10474_low_7
Description: NF10474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10474_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 22 - 397
Target Start/End: Original strand, 15275499 - 15275863
Alignment:
| Q |
22 |
aaaccccacatggaacatcccggtcaagtttgctgtcaacgaatctctcgcttactataatcgtctctctcttgaagtcaaactcatctcctatcgaaaa |
121 |
Q |
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| T |
15275499 |
aaaccccacatggaacatcccggtcaagttcgctgtcaacgaatctctcgcttactataatcgtctctctcttgaagtcaaactcatctcctatcgaaaa |
15275598 |
T |
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| Q |
122 |
ttcctcccaaaattcctcccatgcagtaccattggcaaggtccgtatccctctcaagggacttcttgataaccctgccaatgccggtttccaactcagtt |
221 |
Q |
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| T |
15275599 |
------------ttcctcccatgcagtaccattggcaaggtccgtatccctctcaagggacttcttgataaccctgccaatgccggtttccaactcagtt |
15275686 |
T |
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| Q |
222 |
atcaggttaggaaaaaacgctctcggaaatccaagggtaccttaaacctctcctacaaattcggtgatcg-tttttatgctcaggtgacaacaaatgtga |
320 |
Q |
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| T |
15275687 |
atcaggttaggaaaaaacgctctcggaaatccaagggtaccttaaacctctcctacaaatttggtgatcgttttttatgctcaggtgacaacaaatgtga |
15275786 |
T |
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| Q |
321 |
taaagaatgatggcctttttattggaatggcattatgtcttgcgatgttcatcattcttgcataagatgatgccttt |
397 |
Q |
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| T |
15275787 |
taaagaatgatggcctttttattggaatggctttatgtcttgcgatgttcatcattcttgcataagatgatgccttt |
15275863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 29 - 282
Target Start/End: Original strand, 15263871 - 15264112
Alignment:
| Q |
29 |
acatggaacatcccggtcaagtttgctgtcaacgaatctctcgcttactataatcgtctctctcttgaagtcaaactcatctcctatcgaaaattcctcc |
128 |
Q |
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| T |
15263871 |
acatggaacatccccatcaagttcgccgtcaaggaatctctcgtctaccataatcgtctctctctcgaaatcaaactcatttcctatcgaaaa------- |
15263963 |
T |
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| Q |
129 |
caaaattcctcccatgcagtaccattggcaaggtccgtatccctctcaagggacttcttgataaccctgccaatgccggtttccaactcagttatcaggt |
228 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| | | |||||||||| || |
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| T |
15263964 |
-----ttcctcccacgcagtaccattggcaaggtccgtatccctctcttgggacttcttgataactctgcctatgccggtcatccattcagttatcaagt |
15264058 |
T |
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| Q |
229 |
taggaaaaaacgctctcggaaatccaagggtaccttaaacctctcctacaaatt |
282 |
Q |
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| T |
15264059 |
taggaaaaaacgctctgggaaatccaagggtaccataaacctctcttacaaatt |
15264112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 292
Target Start/End: Complemental strand, 27155791 - 27155665
Alignment:
| Q |
166 |
tatccctctcaagggacttcttgataaccctgccaatgccggtttccaactcagttatcaggttaggaaaaaacgctctcggaaatccaagggtacctta |
265 |
Q |
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| T |
27155791 |
tatccctctcaaggaacttcttgataaccctgctgctgctggccaccaactcagttaccaggttaggaaaaaaccctctcacaaatccaggggtagctta |
27155692 |
T |
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| Q |
266 |
aacctctcctacaaattcggtgatcgt |
292 |
Q |
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| T |
27155691 |
aacctctcctacaaatttggtgatcgt |
27155665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 15251356 - 15251464
Alignment:
| Q |
22 |
aaaccccacatggaacatcccggtcaagtttgctgtcaacgaatctctcgcttactataatcgtctctctcttgaagtcaaactcatctcctatcgaaaa |
121 |
Q |
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||||||||||||||||||||| |||||||| ||||| ||||||||||| || | ||| | |||||||| |||||||||||| ||||| ||||||| |
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| T |
15251356 |
aaaccccacatggaacatccccgtcaagttcatcgtcaatgaatctctcgccaaccagaattgcctctctctcgaagtcaaactcctctcccgtcgaaaa |
15251455 |
T |
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| Q |
122 |
ttcctccca |
130 |
Q |
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||||||||| |
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| T |
15251456 |
ttcctccca |
15251464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 291
Target Start/End: Complemental strand, 12835921 - 12835802
Alignment:
| Q |
166 |
tatccctctcaagggacttcttgataaccctgccaatgccggtttccaactcagttatcaggttaggaaaaaacgctctcggaaatccaagggtacctta |
265 |
Q |
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|||||||||||||| |||| |||||||||||||| || |||||||||||||||||||||||||| | ||| |||||||| || ||||| |
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| T |
12835921 |
tatccctctcaaggaactttttgataaccctgcc------ggccaccaactcagttatcaggttaggaaaataaactcagagaaatccagagggaccttg |
12835828 |
T |
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| Q |
266 |
aacctctcctacaaattcggtgatcg |
291 |
Q |
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||||||||||||||| |||||||||| |
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| T |
12835827 |
aacctctcctacaaactcggtgatcg |
12835802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 14431343 - 14431283
Alignment:
| Q |
57 |
tcaacgaatctctcgcttactataatcgtctctctcttgaagtcaaactcatctcctatcg |
117 |
Q |
| |
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||||||| ||||||||| || | |||||||||||||| || ||||||||||||||| |||| |
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| T |
14431343 |
tcaacgattctctcgctaaccagaatcgtctctctctcgaggtcaaactcatctccgatcg |
14431283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 15251579 - 15251615
Alignment:
| Q |
254 |
aagggtaccttaaacctctcctacaaattcggtgatc |
290 |
Q |
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| T |
15251579 |
aagggtaccttaaacctctcctacaaatttggtgatc |
15251615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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