View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10474_low_9 (Length: 274)
Name: NF10474_low_9
Description: NF10474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10474_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 13889059 - 13889317
Alignment:
| Q |
1 |
tgtcaaatgtactatctattgaagcgaaaagcacaaaacctggattaacttttaatggtaagggagaaccattcaatgtttgatttcctccttcaatgcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13889059 |
tgtcaaatgtactatctattgaagcgaaaagcacaaaacctggattaacttttaatggcaagggagaaccattcaatgtttgatttcctccttcaatgcg |
13889158 |
T |
|
| Q |
101 |
caaagagaagtttccagctttggtcacgacaaactcaatgacaatataatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13889159 |
caaagagaagtttccagctttggtcacgacaaactcaatgacaatataatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaa |
13889258 |
T |
|
| Q |
201 |
ccattttcactcaacatagacaacttaaaatcaggcatataggacacttcagtcgtctc |
259 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13889259 |
ccattttcactcaacatagacagtttaaaatcaggcatataggacacttcagtcgtctc |
13889317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 14029184 - 14029442
Alignment:
| Q |
1 |
tgtcaaatgtactatctattgaagcgaaaagcacaaaacctggattaacttttaatggtaagggagaaccattcaatgtttgatttcctccttcaatgcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14029184 |
tgtcaaatgtactatctattgaagcgaaaagcacaaaacctggattaacttttaatggcaagggagaaccattcaatgtttgatttcctccttcaatgcg |
14029283 |
T |
|
| Q |
101 |
caaagagaagtttccagctttggtcacgacaaactcaatgacaatataatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14029284 |
caaagagaagtttccagctttggtcacgacaaactcaatgacaatataatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaa |
14029383 |
T |
|
| Q |
201 |
ccattttcactcaacatagacaacttaaaatcaggcatataggacacttcagtcgtctc |
259 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14029384 |
ccattttcactcaacatagacagtttaaaatcaggcatataggacacttcagtcgtctc |
14029442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 7690138 - 7690380
Alignment:
| Q |
17 |
tattgaagcgaaaagcacaaaacctggattaacttttaatggtaagggagaaccattcaatgtttgatttcctccttcaatgcgcaaagagaagtttcca |
116 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
7690138 |
tattgaagcaaatagcacaaaacctggattcacttttaatggtaagggagaaccattcaatgtttgatttcctccttctatgtgcatagagaagtttccg |
7690237 |
T |
|
| Q |
117 |
gctttggtcacgacaaactcaatgacaatataatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaaccattttcactcaaca |
216 |
Q |
| |
|
|||||||| | || ||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| |||||||||| |||||||| ||||||| |
|
|
| T |
7690238 |
gctttggttgctacgaactcaatgactatataatcaaactcattccaccccatgttagagatatcaggctcagttgcaatagagccattttcgctcaaca |
7690337 |
T |
|
| Q |
217 |
tagacaacttaaaatcaggcatataggacacttcagtcgtctc |
259 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
7690338 |
tagataacttaaaatcaggcatatatgacacttgagtcgtctc |
7690380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University