View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10475_low_1 (Length: 574)

Name: NF10475_low_1
Description: NF10475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10475_low_1
NF10475_low_1
[»] chr6 (6 HSPs)
chr6 (178-557)||(8041542-8041922)
chr6 (321-557)||(7971766-7972002)
chr6 (372-535)||(7979356-7979519)
chr6 (348-501)||(8031834-8031987)
chr6 (126-171)||(7972036-7972081)
chr6 (126-178)||(8041417-8041469)
[»] chr2 (3 HSPs)
chr2 (332-557)||(41382165-41382390)
chr2 (196-322)||(45123544-45123670)
chr2 (410-450)||(43853161-43853201)
[»] chr4 (1 HSPs)
chr4 (174-320)||(23523052-23523199)
[»] chr5 (2 HSPs)
chr5 (174-322)||(31384737-31384886)
chr5 (174-323)||(26558385-26558535)
[»] scaffold0531 (1 HSPs)
scaffold0531 (347-531)||(3315-3499)
[»] chr7 (1 HSPs)
chr7 (383-498)||(14198790-14198905)
[»] chr3 (2 HSPs)
chr3 (195-234)||(48961307-48961346)
chr3 (238-320)||(48960123-48960204)


Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 178 - 557
Target Start/End: Original strand, 8041542 - 8041922
Alignment:
Q  178 tggcacac-ataaaggaagctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatattaattc 276  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8041542 tggcacacgataaaggaagctagtgttattatatgtttcaaataaatgaaagtcaacaaagcttataatctcaagtatatctaaagaccaatattaattc 8041641  T
Q  277 gttgctattcgtgcactaccatgtcgcaccaacaagctttttcctttaatgaatcaatatttgttttactctactcaggggtccaggattggctatactt 376  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  8041642 gttgctattcatgcactaacatgttgcaccaacaagctttttcctttaatgaatcaatatttgttttattctactcaggggtccaggtttggctatactt 8041741  T
Q  377 gttctttcatgggtcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggc 476  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8041742 gtcctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggc 8041841  T
Q  477 aacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcggctcggacattgtct 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8041842 aacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtct 8041922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 321 - 557
Target Start/End: Complemental strand, 7972002 - 7971766
Alignment:
Q  321 tttaatgaatcaatatttgttttactctactcaggggtccaggattggctatacttgttctttcatgggtcatcacactgtacaccttgtggcaaatggt 420  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7972002 tttaatgaatcaatatttgttttactctaatcaggggtccaggattggctatacttgttctttcatggatcatcacactgtacaccttgtggcaaatggt 7971903  T
Q  421 tgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcct 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7971902 tgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcct 7971803  T
Q  521 caacaacttgtggtacaggtcggctcggacattgtct 557  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7971802 caacaacttgtggtacaggtcgggtcggacattgtct 7971766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 372 - 535
Target Start/End: Complemental strand, 7979519 - 7979356
Alignment:
Q  372 tacttgttctttcatgggtcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaatt 471  Q
    ||||||||||||||||| |||||||| | |||||  | ||||||||||||||||||||||| |||||||| ||||||||  |||||| |||  |||||||    
T  7979519 tacttgttctttcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaatt 7979420  T
Q  472 agggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggta 535  Q
    ||| ||||||||||||||  |||| |||||  | |  |||||| ||||||||||||||||||||    
T  7979419 aggtcaacatgcttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggta 7979356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 348 - 501
Target Start/End: Original strand, 8031834 - 8031987
Alignment:
Q  348 tactcaggggtccaggattggctatacttgttctttcatgggtcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaa 447  Q
    |||||||||||||||| ||| |||||||| |  | ||||||  |||||| ||||| || |||||||||||||||||||||||||| ||| |||| |||||    
T  8031834 tactcaggggtccaggtttgactatacttctcttatcatggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattccgggaaa 8031933  T
Q  448 acgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagg 501  Q
    |||| |||||| |||  |||||||||| |||||||| ||||| |||||||||||    
T  8031934 acgttttgatagataccatgaattaggtcaacatgcgtttggcgaaaagttagg 8031987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 7972081 - 7972036
Alignment:
Q  126 gataaaggtttcactaaaatgaatggtagaagttgcaaattctatg 171  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  7972081 gataaaggtttcactaaaatgaatggtataagttgcaaattctatg 7972036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 8041417 - 8041469
Alignment:
Q  126 gataaaggtttcactaaaatgaatggtagaagttgcaaattctatgaacgact 178  Q
    |||||||||||||||||||||| | |||||||||||||||||| || ||||||    
T  8041417 gataaaggtttcactaaaatgattagtagaagttgcaaattctctgtacgact 8041469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 332 - 557
Target Start/End: Complemental strand, 41382390 - 41382165
Alignment:
Q  332 aatatttgttttactctactcaggggtccaggattggctatacttgttctttcatgggtcatcacactgtacaccttgtggcaaatggttgagatgcatg 431  Q
    ||||||| |||||||||| ||||||||||||| |||  ||||||| | ||||||||| ||||||| || |||||| ||||||||||||||||||||||||    
T  41382390 aatatttcttttactctattcaggggtccaggtttgattatacttatcctttcatggatcatcactctctacaccctgtggcaaatggttgagatgcatg 41382291  T
Q  432 agatggttccaggaaaacgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgt 531  Q
    |||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41382290 agatggttccgggaaaacgtcttgatacatataatgaattgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgt 41382191  T
Q  532 ggtacaggtcggctcggacattgtct 557  Q
    |||||| || ||   |||||||||||    
T  41382190 ggtacaagttggggtggacattgtct 41382165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 45123670 - 45123544
Alignment:
Q  196 ctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatattaattcgttgctattcgtgcactac 295  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  45123670 ctagtgttattacatttttctaataaatgaatgtcaacaaagcttacaatctcaagtatatccaaaggccaatattaattcgttgctatttgtgcactac 45123571  T
Q  296 catgtcgcaccaacaagctttttcctt 322  Q
    |||||||||||||||||||||||||||    
T  45123570 catgtcgcaccaacaagctttttcctt 45123544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 43853161 - 43853201
Alignment:
Q  410 tggcaaatggttgagatgcatgagatggttccaggaaaacg 450  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  43853161 tggcaaatggttgaaatgcatgaaatggttccaggaaaacg 43853201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 174 - 320
Target Start/End: Complemental strand, 23523199 - 23523052
Alignment:
Q  174 cgactggcacac-ataaaggaagctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatatta 272  Q
    ||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  23523199 cgactagcacacgataaaggcagctagtgttattatatttttctaataaatgaaagtcaacaaagcttacaatctcaattatatccaaaggccaatatta 23523100  T
Q  273 attcgttgctattcgtgcactaccatgtcgcaccaacaagctttttcc 320  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23523099 attcgttgctattcgtgcactaccatgtcacaccaacaagctttttcc 23523052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 31384737 - 31384886
Alignment:
Q  174 cgactggcacaca-taaaggaagctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatatta 272  Q
    ||||||||||||  |||||| |||||||||| |||||||||||||||||||||||||||||  | |||| ||||||||| |||||||||  | || ||||    
T  31384737 cgactggcacacggtaaaggcagctagtgttgttatatttttcaaataaatgaaagtcaacgcaacttacaatctcaagcatatccaaaagctaacatta 31384836  T
Q  273 attcgttgctattcgtgcactaccatgtcgcaccaacaagctttttcctt 322  Q
    |||||||||| ||||| ||||| |||||||||||||||||||||||||||    
T  31384837 attcgttgcttttcgtccactagcatgtcgcaccaacaagctttttcctt 31384886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 174 - 323
Target Start/End: Complemental strand, 26558535 - 26558385
Alignment:
Q  174 cgactggcacac-ataaaggaagctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatatta 272  Q
    |||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||||| |  ||| ||||||||| ||||| |||| |  ||||||    
T  26558535 cgactggcacacgatgcaggtagctagtgttattatatttttcaaataaatgaaagtcaacacaatttacaatctcaagcatatctaaaggctgatatta 26558436  T
Q  273 attcgttgctattcgtgcactaccatgtcgcaccaacaagctttttccttt 323  Q
     ||||||| | ||||||||||| |||||||||||||||| |||||||||||    
T  26558435 tttcgttggttttcgtgcactaacatgtcgcaccaacaaactttttccttt 26558385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 347 - 531
Target Start/End: Complemental strand, 3499 - 3315
Alignment:
Q  347 ctactcaggggtccaggattggctatacttgttctttcatgggtcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaa 446  Q
    ||||||||||||||||| ||| |||||||| |  | |||||| ||||||| ||||| || |||||||||||||||||||||||||| |||||||| ||||    
T  3499 ctactcaggggtccaggtttgactatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaa 3400  T
Q  447 aacgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgt 531  Q
    ||||| ||||||  ||  ||||| | || ||||| || ||||| |||||||||||  | |  |||||| ||||||||||||||||    
T  3399 aacgttttgataggtaccatgaactgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgt 3315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 383 - 498
Target Start/End: Complemental strand, 14198905 - 14198790
Alignment:
Q  383 tcatgggtcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggcaacatg 482  Q
    |||||| |||||||| | ||||| || ||||||||||||||||||||||| ||||| || || |||||| | |||| |||| ||||| | || ||| |||    
T  14198905 tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatg 14198806  T
Q  483 cttttggtgaaaagtt 498  Q
    ||||||||||||||||    
T  14198805 cttttggtgaaaagtt 14198790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 48961346 - 48961307
Alignment:
Q  195 gctagtgttattatatttttcaaataaatgaaagtcaaca 234  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48961346 gctagtgttattatatttttcaaataaatgaaagtcaaca 48961307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 48960204 - 48960123
Alignment:
Q  238 cttataatctcaagtatatccaaagaccaatattaattcgttgctattcgtgcactaccatgtcgcaccaacaagctttttcc 320  Q
    |||| ||||||||  ||||||||| || ||||||  ||||| | | ||||||||||| |||| ||||||||||||||||||||    
T  48960204 cttacaatctcaaacatatccaaatactaatattt-ttcgtaggttttcgtgcactaacatgccgcaccaacaagctttttcc 48960123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University