View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10475_low_5 (Length: 257)
Name: NF10475_low_5
Description: NF10475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10475_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 45648609 - 45648850
Alignment:
| Q |
1 |
ttaggtggtacaagtacgaggaaggattttggaaagtagatgaggtgaagtctctttcactttaagcagacgataatggcagtttggtatgatctggttg |
100 |
Q |
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| T |
45648609 |
ttaggtggtacaagtacgaggaaggattttggaaagtagatgaggtgaagtctcttgcactttaagcagacgataatggcggtttggtatgatctggttg |
45648708 |
T |
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| Q |
101 |
ttgatcattttcggttgttaatttttctcttttaactgtagattcaaataacaaatttgaatgattacaaattggtattgttgtgccctttaaaaggagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45648709 |
ttgatcattttcggttgttaatttttctcttttaactgtagattcaaataacaaatttgaatgattacaaattggtattgttgtgccctttaaaaggagt |
45648808 |
T |
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| Q |
201 |
ttgttaaatcttgtaattgtgcttaagaataatctttgtatt |
242 |
Q |
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| T |
45648809 |
ttgttaaatcttgtaactgtgcttaagaataatctttgtatt |
45648850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 45643590 - 45643810
Alignment:
| Q |
1 |
ttaggtggtacaagtacgaggaaggattttggaaagtagatgaggtgaagtctctttcactttaagcagacgataatggcagtttggtatgatctggttg |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| ||||||||| |||| || |||||||||| |
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| T |
45643590 |
ttaggtggtacaagtatgaggaaggattttggaaagaagatgaggtgaagtctcttgcactctaagcagacaataactgc----------gatctggttg |
45643679 |
T |
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| Q |
101 |
ttgatcattttcggttgttaatttttctcttttaactgtagattcaaataacaaatttgaatgattacaaattggtattgttgtgccctttaaaaggagt |
200 |
Q |
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|||| |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45643680 |
ttgaacattttcggttgttaagtttt-tcttttaattgtagattcaaataacaaatttgaatgattacaaattggtgttgttgtgccctttaaaaggagt |
45643778 |
T |
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| Q |
201 |
ttgttaaatcttgtaattgtgcttaagaataa |
232 |
Q |
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| T |
45643779 |
ttgttaaatcttgtaactgtgcataagaataa |
45643810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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